Experiment: LB, pH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01475 and BPHYT_RS01480 overlap by 4 nucleotides BPHYT_RS01480 and BPHYT_RS01485 overlap by 11 nucleotides BPHYT_RS01485 and BPHYT_RS01490 are separated by 0 nucleotides BPHYT_RS01490 and BPHYT_RS01495 are separated by 107 nucleotides
BPHYT_RS01475: BPHYT_RS01475 - 16S rRNA methyltransferase, at 336,748 to 338,187
_RS01475
BPHYT_RS01480: BPHYT_RS01480 - hypothetical protein, at 338,184 to 338,783
_RS01480
BPHYT_RS01485: BPHYT_RS01485 - histidine kinase, at 338,773 to 341,187
_RS01485
BPHYT_RS01490: BPHYT_RS01490 - XRE family transcriptional regulator, at 341,188 to 341,877
_RS01490
BPHYT_RS01495: BPHYT_RS01495 - tRNA-Phe, at 341,985 to 342,060
_RS01495
Position (kb) 338
339
340
341
342 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 337.957 kb on + strand, within BPHYT_RS01475 at 337.957 kb on + strand, within BPHYT_RS01475 at 337.958 kb on - strand, within BPHYT_RS01475 at 337.962 kb on + strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 337.963 kb on - strand, within BPHYT_RS01475 at 338.020 kb on + strand, within BPHYT_RS01475 at 338.021 kb on - strand, within BPHYT_RS01475 at 338.021 kb on - strand, within BPHYT_RS01475 at 338.034 kb on - strand, within BPHYT_RS01475 at 338.034 kb on - strand, within BPHYT_RS01475 at 338.034 kb on - strand, within BPHYT_RS01475 at 338.164 kb on + strand at 338.164 kb on + strand at 338.777 kb on + strand at 338.777 kb on + strand at 338.778 kb on - strand at 338.781 kb on + strand at 339.704 kb on - strand, within BPHYT_RS01485 at 342.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH4 remove 337,957 + BPHYT_RS01475 0.84 +0.2 337,957 + BPHYT_RS01475 0.84 +0.0 337,958 - BPHYT_RS01475 0.84 -1.3 337,962 + BPHYT_RS01475 0.84 +0.2 337,963 - BPHYT_RS01475 0.84 -0.3 337,963 - BPHYT_RS01475 0.84 +1.6 337,963 - BPHYT_RS01475 0.84 -0.6 337,963 - BPHYT_RS01475 0.84 -0.4 337,963 - BPHYT_RS01475 0.84 -0.2 338,020 + BPHYT_RS01475 0.88 +0.0 338,021 - BPHYT_RS01475 0.88 -1.1 338,021 - BPHYT_RS01475 0.88 -0.5 338,034 - BPHYT_RS01475 0.89 -1.3 338,034 - BPHYT_RS01475 0.89 -2.1 338,034 - BPHYT_RS01475 0.89 -1.7 338,164 + -0.7 338,164 + -0.1 338,777 + +0.6 338,777 + -0.3 338,778 - -2.1 338,781 + -1.9 339,704 - BPHYT_RS01485 0.39 -4.0 342,116 - -0.2
Or see this region's nucleotide sequence