Experiment: CDM1 without Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11030 and BBR_RS20580 are separated by 311 nucleotides BBR_RS20580 and BBR_RS11040 are separated by 107 nucleotides BBR_RS11040 and BBR_RS11045 are separated by 2 nucleotides
BBR_RS11030: BBR_RS11030 - hypothetical protein, at 214,440 to 215,060
_RS11030
BBR_RS20580: BBR_RS20580 - IS30 family transposase, at 215,372 to 216,072
_RS20580
BBR_RS11040: BBR_RS11040 - ATPase AAA, at 216,180 to 216,965
_RS11040
BBR_RS11045: BBR_RS11045 - IS21 family transposase, at 216,968 to 218,449
_RS11045
Position (kb) 215
216
217 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 214.372 kb on + strand at 214.378 kb on - strand at 214.380 kb on - strand at 214.380 kb on - strand at 214.380 kb on - strand at 214.382 kb on - strand at 214.382 kb on - strand at 214.382 kb on - strand at 214.392 kb on - strand at 214.392 kb on - strand at 214.411 kb on + strand at 214.416 kb on + strand at 214.416 kb on + strand at 214.423 kb on + strand at 214.423 kb on + strand at 214.423 kb on + strand at 214.423 kb on + strand at 214.423 kb on + strand at 214.423 kb on + strand at 214.423 kb on + strand at 214.428 kb on + strand at 214.429 kb on - strand at 214.429 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.431 kb on - strand at 214.437 kb on + strand at 215.049 kb on - strand at 215.049 kb on - strand at 215.051 kb on - strand at 215.056 kb on + strand at 215.059 kb on - strand at 215.059 kb on - strand at 215.086 kb on + strand at 215.091 kb on + strand at 215.096 kb on - strand at 215.111 kb on + strand at 215.111 kb on + strand at 215.128 kb on + strand at 215.172 kb on + strand at 215.196 kb on + strand at 215.196 kb on + strand at 215.196 kb on + strand at 215.204 kb on - strand at 215.204 kb on - strand at 215.204 kb on - strand at 215.301 kb on + strand at 215.327 kb on + strand at 215.328 kb on + strand at 215.330 kb on - strand at 215.361 kb on + strand at 215.361 kb on + strand at 215.369 kb on + strand at 215.369 kb on - strand at 215.369 kb on - strand at 215.369 kb on - strand at 215.369 kb on - strand at 215.371 kb on - strand at 215.395 kb on + strand at 215.408 kb on + strand at 215.412 kb on + strand at 215.445 kb on - strand, within BBR_RS20580 at 215.472 kb on + strand, within BBR_RS20580 at 215.501 kb on - strand, within BBR_RS20580 at 215.506 kb on + strand, within BBR_RS20580 at 215.531 kb on - strand, within BBR_RS20580 at 215.541 kb on + strand, within BBR_RS20580 at 215.541 kb on + strand, within BBR_RS20580 at 215.566 kb on + strand, within BBR_RS20580 at 215.566 kb on + strand, within BBR_RS20580 at 215.566 kb on + strand, within BBR_RS20580 at 215.571 kb on + strand, within BBR_RS20580 at 215.574 kb on - strand, within BBR_RS20580 at 215.574 kb on - strand, within BBR_RS20580 at 215.574 kb on - strand, within BBR_RS20580 at 215.574 kb on - strand, within BBR_RS20580 at 215.574 kb on - strand, within BBR_RS20580 at 215.584 kb on - strand, within BBR_RS20580 at 215.586 kb on - strand, within BBR_RS20580 at 215.593 kb on + strand, within BBR_RS20580 at 215.593 kb on + strand, within BBR_RS20580 at 215.601 kb on - strand, within BBR_RS20580 at 215.601 kb on - strand, within BBR_RS20580 at 215.603 kb on - strand, within BBR_RS20580 at 215.612 kb on + strand, within BBR_RS20580 at 215.617 kb on + strand, within BBR_RS20580 at 215.617 kb on + strand, within BBR_RS20580 at 215.617 kb on + strand, within BBR_RS20580 at 215.617 kb on + strand, within BBR_RS20580 at 215.617 kb on + strand, within BBR_RS20580 at 215.617 kb on + strand, within BBR_RS20580 at 215.625 kb on - strand, within BBR_RS20580 at 215.625 kb on - strand, within BBR_RS20580 at 215.625 kb on - strand, within BBR_RS20580 at 215.625 kb on - strand, within BBR_RS20580 at 215.625 kb on - strand, within BBR_RS20580 at 215.654 kb on - strand, within BBR_RS20580 at 215.669 kb on - strand, within BBR_RS20580 at 215.669 kb on - strand, within BBR_RS20580 at 215.682 kb on - strand, within BBR_RS20580 at 215.683 kb on - strand, within BBR_RS20580 at 215.708 kb on - strand, within BBR_RS20580 at 215.735 kb on - strand, within BBR_RS20580 at 215.740 kb on - strand, within BBR_RS20580 at 215.789 kb on - strand, within BBR_RS20580 at 215.838 kb on - strand, within BBR_RS20580 at 215.838 kb on - strand, within BBR_RS20580 at 215.842 kb on - strand, within BBR_RS20580 at 215.855 kb on + strand, within BBR_RS20580 at 215.863 kb on - strand, within BBR_RS20580 at 215.863 kb on - strand, within BBR_RS20580 at 215.875 kb on + strand, within BBR_RS20580 at 215.875 kb on + strand, within BBR_RS20580 at 215.881 kb on + strand, within BBR_RS20580 at 215.883 kb on + strand, within BBR_RS20580 at 215.890 kb on + strand, within BBR_RS20580 at 215.915 kb on + strand, within BBR_RS20580 at 215.916 kb on + strand, within BBR_RS20580 at 215.916 kb on + strand, within BBR_RS20580 at 215.945 kb on + strand, within BBR_RS20580 at 215.947 kb on + strand, within BBR_RS20580 at 215.947 kb on + strand, within BBR_RS20580 at 215.964 kb on + strand, within BBR_RS20580 at 215.994 kb on + strand, within BBR_RS20580 at 216.004 kb on + strand at 216.020 kb on - strand at 216.027 kb on - strand at 216.033 kb on - strand at 216.033 kb on - strand at 216.055 kb on + strand at 216.055 kb on + strand at 216.075 kb on - strand at 216.110 kb on - strand at 216.122 kb on - strand at 216.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Arginine remove 214,372 + -1.6 214,378 - -2.1 214,380 - -0.8 214,380 - +1.0 214,380 - +1.1 214,382 - -0.0 214,382 - -0.7 214,382 - -0.8 214,392 - +0.0 214,392 - -0.6 214,411 + +1.3 214,416 + -1.5 214,416 + -0.9 214,423 + -1.7 214,423 + -2.7 214,423 + -3.0 214,423 + -0.1 214,423 + +0.3 214,423 + +0.3 214,423 + -1.0 214,428 + -0.3 214,429 - -0.2 214,429 - -0.8 214,431 - +0.0 214,431 - -1.0 214,431 - -1.8 214,431 - -1.6 214,431 - -1.7 214,431 - -0.9 214,431 - -0.7 214,431 - -2.0 214,431 - -0.7 214,431 - -0.6 214,431 - -1.4 214,431 - -1.0 214,431 - -0.1 214,431 - +0.4 214,437 + -1.3 215,049 - -1.5 215,049 - -1.1 215,051 - -1.9 215,056 + -0.1 215,059 - -2.7 215,059 - -3.0 215,086 + -0.8 215,091 + +0.1 215,096 - -1.8 215,111 + -0.8 215,111 + +0.3 215,128 + +0.5 215,172 + -3.2 215,196 + -0.6 215,196 + -4.5 215,196 + -0.3 215,204 - -0.4 215,204 - -0.9 215,204 - +0.1 215,301 + -0.3 215,327 + -1.1 215,328 + -0.3 215,330 - -0.5 215,361 + +0.1 215,361 + -0.7 215,369 + +0.2 215,369 - +0.2 215,369 - +0.2 215,369 - +0.7 215,369 - -1.6 215,371 - -0.9 215,395 + -0.7 215,408 + +0.2 215,412 + -1.2 215,445 - BBR_RS20580 0.10 -1.0 215,472 + BBR_RS20580 0.14 +0.7 215,501 - BBR_RS20580 0.18 -3.1 215,506 + BBR_RS20580 0.19 +0.1 215,531 - BBR_RS20580 0.23 -0.3 215,541 + BBR_RS20580 0.24 +0.2 215,541 + BBR_RS20580 0.24 +0.0 215,566 + BBR_RS20580 0.28 +0.5 215,566 + BBR_RS20580 0.28 +0.8 215,566 + BBR_RS20580 0.28 +0.2 215,571 + BBR_RS20580 0.28 -0.3 215,574 - BBR_RS20580 0.29 +0.1 215,574 - BBR_RS20580 0.29 -0.1 215,574 - BBR_RS20580 0.29 -0.3 215,574 - BBR_RS20580 0.29 +0.8 215,574 - BBR_RS20580 0.29 -0.8 215,584 - BBR_RS20580 0.30 -1.4 215,586 - BBR_RS20580 0.31 -0.7 215,593 + BBR_RS20580 0.32 +0.3 215,593 + BBR_RS20580 0.32 +0.2 215,601 - BBR_RS20580 0.33 -0.4 215,601 - BBR_RS20580 0.33 +0.2 215,603 - BBR_RS20580 0.33 +0.1 215,612 + BBR_RS20580 0.34 -0.1 215,617 + BBR_RS20580 0.35 +1.1 215,617 + BBR_RS20580 0.35 -0.4 215,617 + BBR_RS20580 0.35 +1.5 215,617 + BBR_RS20580 0.35 -0.4 215,617 + BBR_RS20580 0.35 -1.2 215,617 + BBR_RS20580 0.35 +0.6 215,625 - BBR_RS20580 0.36 +0.0 215,625 - BBR_RS20580 0.36 +0.8 215,625 - BBR_RS20580 0.36 +0.2 215,625 - BBR_RS20580 0.36 -0.2 215,625 - BBR_RS20580 0.36 +0.1 215,654 - BBR_RS20580 0.40 +0.6 215,669 - BBR_RS20580 0.42 +0.9 215,669 - BBR_RS20580 0.42 -0.9 215,682 - BBR_RS20580 0.44 -1.4 215,683 - BBR_RS20580 0.44 -0.6 215,708 - BBR_RS20580 0.48 +0.1 215,735 - BBR_RS20580 0.52 +0.2 215,740 - BBR_RS20580 0.52 +0.2 215,789 - BBR_RS20580 0.59 +0.6 215,838 - BBR_RS20580 0.66 -0.7 215,838 - BBR_RS20580 0.66 -0.4 215,842 - BBR_RS20580 0.67 +0.3 215,855 + BBR_RS20580 0.69 -0.3 215,863 - BBR_RS20580 0.70 +0.5 215,863 - BBR_RS20580 0.70 -1.1 215,875 + BBR_RS20580 0.72 -2.0 215,875 + BBR_RS20580 0.72 +0.3 215,881 + BBR_RS20580 0.73 +0.1 215,883 + BBR_RS20580 0.73 -1.1 215,890 + BBR_RS20580 0.74 +1.3 215,915 + BBR_RS20580 0.77 +0.5 215,916 + BBR_RS20580 0.78 +0.0 215,916 + BBR_RS20580 0.78 -0.3 215,945 + BBR_RS20580 0.82 -0.2 215,947 + BBR_RS20580 0.82 -0.4 215,947 + BBR_RS20580 0.82 +0.0 215,964 + BBR_RS20580 0.84 -1.0 215,994 + BBR_RS20580 0.89 +0.3 216,004 + -1.0 216,020 - -0.3 216,027 - -0.9 216,033 - -0.3 216,033 - -0.4 216,055 + -0.5 216,055 + +0.8 216,075 - -0.1 216,110 - -0.6 216,122 - -0.5 216,122 - +0.3
Or see this region's nucleotide sequence