Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13610

Experiment: CDM1 without Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13605 and BBR_RS13610 are separated by 217 nucleotidesBBR_RS13610 and BBR_RS13615 overlap by 4 nucleotidesBBR_RS13615 and BBR_RS13620 are separated by 127 nucleotides BBR_RS13605: BBR_RS13605 - GGDEF domain-containing protein, at 824,281 to 826,734 _RS13605 BBR_RS13610: BBR_RS13610 - iron export ABC transporter permease subunit FetB, at 826,952 to 827,740 _RS13610 BBR_RS13615: BBR_RS13615 - ABC transporter ATP-binding protein, at 827,737 to 828,453 _RS13615 BBR_RS13620: BBR_RS13620 - elongation factor P, at 828,581 to 829,144 _RS13620 Position (kb) 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1at 825.952 kb on - strand, within BBR_RS13605at 825.952 kb on - strand, within BBR_RS13605at 825.967 kb on + strand, within BBR_RS13605at 826.038 kb on + strand, within BBR_RS13605at 826.038 kb on + strand, within BBR_RS13605at 826.038 kb on + strand, within BBR_RS13605at 826.038 kb on + strand, within BBR_RS13605at 826.040 kb on + strand, within BBR_RS13605at 826.061 kb on + strand, within BBR_RS13605at 826.076 kb on + strand, within BBR_RS13605at 826.132 kb on - strand, within BBR_RS13605at 826.147 kb on + strand, within BBR_RS13605at 826.154 kb on - strand, within BBR_RS13605at 826.154 kb on - strand, within BBR_RS13605at 826.203 kb on - strand, within BBR_RS13605at 826.231 kb on + strand, within BBR_RS13605at 826.274 kb on + strand, within BBR_RS13605at 826.277 kb on - strand, within BBR_RS13605at 826.282 kb on - strand, within BBR_RS13605at 826.295 kb on + strand, within BBR_RS13605at 826.305 kb on + strand, within BBR_RS13605at 826.322 kb on + strand, within BBR_RS13605at 826.385 kb on - strand, within BBR_RS13605at 826.398 kb on + strand, within BBR_RS13605at 826.398 kb on + strand, within BBR_RS13605at 826.507 kb on + strandat 826.544 kb on + strandat 826.561 kb on - strandat 826.574 kb on - strandat 826.593 kb on + strandat 826.607 kb on - strandat 826.610 kb on - strandat 826.624 kb on + strandat 826.639 kb on + strandat 826.652 kb on - strandat 826.689 kb on + strandat 826.712 kb on - strandat 826.719 kb on + strandat 826.734 kb on - strandat 826.832 kb on - strandat 826.939 kb on + strandat 827.007 kb on + strandat 827.013 kb on + strandat 827.013 kb on + strandat 827.021 kb on - strandat 827.039 kb on + strand, within BBR_RS13610at 827.039 kb on + strand, within BBR_RS13610at 827.114 kb on - strand, within BBR_RS13610at 827.121 kb on + strand, within BBR_RS13610at 827.139 kb on + strand, within BBR_RS13610at 827.209 kb on - strand, within BBR_RS13610at 827.213 kb on - strand, within BBR_RS13610at 827.230 kb on + strand, within BBR_RS13610at 827.302 kb on + strand, within BBR_RS13610at 827.310 kb on - strand, within BBR_RS13610at 827.325 kb on + strand, within BBR_RS13610at 827.343 kb on - strand, within BBR_RS13610at 827.346 kb on + strand, within BBR_RS13610at 827.354 kb on - strand, within BBR_RS13610at 827.373 kb on + strand, within BBR_RS13610at 827.373 kb on + strand, within BBR_RS13610at 827.415 kb on + strand, within BBR_RS13610at 827.423 kb on - strand, within BBR_RS13610at 827.430 kb on + strand, within BBR_RS13610at 827.458 kb on - strand, within BBR_RS13610at 827.466 kb on + strand, within BBR_RS13610at 827.473 kb on - strand, within BBR_RS13610at 827.474 kb on - strand, within BBR_RS13610at 827.474 kb on - strand, within BBR_RS13610at 827.545 kb on + strand, within BBR_RS13610at 827.553 kb on - strand, within BBR_RS13610at 827.553 kb on - strand, within BBR_RS13610at 827.592 kb on + strand, within BBR_RS13610at 827.592 kb on + strand, within BBR_RS13610at 827.627 kb on + strand, within BBR_RS13610at 827.627 kb on + strand, within BBR_RS13610at 827.627 kb on + strand, within BBR_RS13610at 827.627 kb on + strand, within BBR_RS13610at 827.635 kb on - strand, within BBR_RS13610at 827.635 kb on - strand, within BBR_RS13610at 827.639 kb on + strand, within BBR_RS13610at 827.717 kb on - strandat 827.733 kb on + strandat 827.756 kb on - strandat 827.765 kb on + strandat 827.862 kb on - strand, within BBR_RS13615at 827.894 kb on - strand, within BBR_RS13615at 827.894 kb on - strand, within BBR_RS13615at 827.963 kb on - strand, within BBR_RS13615at 827.965 kb on + strand, within BBR_RS13615at 827.965 kb on + strand, within BBR_RS13615at 827.973 kb on - strand, within BBR_RS13615at 828.016 kb on + strand, within BBR_RS13615at 828.024 kb on - strand, within BBR_RS13615at 828.024 kb on - strand, within BBR_RS13615at 828.030 kb on + strand, within BBR_RS13615at 828.046 kb on + strand, within BBR_RS13615at 828.046 kb on + strand, within BBR_RS13615at 828.089 kb on + strand, within BBR_RS13615at 828.089 kb on + strand, within BBR_RS13615at 828.097 kb on - strand, within BBR_RS13615at 828.118 kb on + strand, within BBR_RS13615at 828.119 kb on + strand, within BBR_RS13615at 828.137 kb on - strand, within BBR_RS13615at 828.143 kb on + strand, within BBR_RS13615at 828.155 kb on - strand, within BBR_RS13615at 828.197 kb on - strand, within BBR_RS13615at 828.197 kb on - strand, within BBR_RS13615at 828.214 kb on + strand, within BBR_RS13615at 828.234 kb on - strand, within BBR_RS13615at 828.253 kb on - strand, within BBR_RS13615at 828.283 kb on + strand, within BBR_RS13615at 828.311 kb on + strand, within BBR_RS13615at 828.319 kb on + strand, within BBR_RS13615at 828.337 kb on + strand, within BBR_RS13615at 828.347 kb on + strand, within BBR_RS13615at 828.347 kb on + strand, within BBR_RS13615at 828.358 kb on - strand, within BBR_RS13615at 828.364 kb on + strand, within BBR_RS13615at 828.372 kb on - strand, within BBR_RS13615at 828.429 kb on - strandat 828.429 kb on - strandat 828.469 kb on - strandat 828.469 kb on - strandat 828.469 kb on - strandat 828.506 kb on - strandat 828.506 kb on - strandat 828.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Arginine
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825,952 - BBR_RS13605 0.68 -1.4
825,952 - BBR_RS13605 0.68 -1.9
825,967 + BBR_RS13605 0.69 -0.6
826,038 + BBR_RS13605 0.72 -1.2
826,038 + BBR_RS13605 0.72 -0.0
826,038 + BBR_RS13605 0.72 -2.1
826,038 + BBR_RS13605 0.72 +0.8
826,040 + BBR_RS13605 0.72 -0.2
826,061 + BBR_RS13605 0.73 -1.7
826,076 + BBR_RS13605 0.73 -1.8
826,132 - BBR_RS13605 0.75 -1.7
826,147 + BBR_RS13605 0.76 -2.0
826,154 - BBR_RS13605 0.76 -1.3
826,154 - BBR_RS13605 0.76 -0.8
826,203 - BBR_RS13605 0.78 -3.0
826,231 + BBR_RS13605 0.79 -0.8
826,274 + BBR_RS13605 0.81 +0.1
826,277 - BBR_RS13605 0.81 -1.0
826,282 - BBR_RS13605 0.82 -1.0
826,295 + BBR_RS13605 0.82 -1.0
826,305 + BBR_RS13605 0.82 +0.5
826,322 + BBR_RS13605 0.83 +0.1
826,385 - BBR_RS13605 0.86 -0.5
826,398 + BBR_RS13605 0.86 +0.9
826,398 + BBR_RS13605 0.86 -0.5
826,507 + +0.8
826,544 + +0.3
826,561 - -1.4
826,574 - -2.3
826,593 + +0.6
826,607 - -0.2
826,610 - -0.8
826,624 + -2.0
826,639 + +0.9
826,652 - -1.2
826,689 + -1.2
826,712 - -2.0
826,719 + -1.0
826,734 - -2.6
826,832 - -1.4
826,939 + -0.8
827,007 + -0.2
827,013 + +0.1
827,013 + -1.6
827,021 - -2.1
827,039 + BBR_RS13610 0.11 -1.3
827,039 + BBR_RS13610 0.11 +0.7
827,114 - BBR_RS13610 0.21 +0.4
827,121 + BBR_RS13610 0.21 -0.9
827,139 + BBR_RS13610 0.24 -1.2
827,209 - BBR_RS13610 0.33 -1.4
827,213 - BBR_RS13610 0.33 +1.1
827,230 + BBR_RS13610 0.35 -3.0
827,302 + BBR_RS13610 0.44 -0.7
827,310 - BBR_RS13610 0.45 -0.0
827,325 + BBR_RS13610 0.47 -0.4
827,343 - BBR_RS13610 0.50 -0.4
827,346 + BBR_RS13610 0.50 -0.7
827,354 - BBR_RS13610 0.51 -0.5
827,373 + BBR_RS13610 0.53 -0.8
827,373 + BBR_RS13610 0.53 -0.5
827,415 + BBR_RS13610 0.59 -0.9
827,423 - BBR_RS13610 0.60 +0.4
827,430 + BBR_RS13610 0.61 -2.8
827,458 - BBR_RS13610 0.64 -1.1
827,466 + BBR_RS13610 0.65 +0.6
827,473 - BBR_RS13610 0.66 +0.5
827,474 - BBR_RS13610 0.66 -0.8
827,474 - BBR_RS13610 0.66 +1.0
827,545 + BBR_RS13610 0.75 +0.2
827,553 - BBR_RS13610 0.76 +0.1
827,553 - BBR_RS13610 0.76 +1.4
827,592 + BBR_RS13610 0.81 -0.2
827,592 + BBR_RS13610 0.81 +0.5
827,627 + BBR_RS13610 0.86 -0.9
827,627 + BBR_RS13610 0.86 +0.1
827,627 + BBR_RS13610 0.86 -0.6
827,627 + BBR_RS13610 0.86 +0.6
827,635 - BBR_RS13610 0.87 +0.1
827,635 - BBR_RS13610 0.87 -0.0
827,639 + BBR_RS13610 0.87 +0.4
827,717 - +0.3
827,733 + -1.2
827,756 - +0.6
827,765 + -2.8
827,862 - BBR_RS13615 0.17 +0.8
827,894 - BBR_RS13615 0.22 -1.1
827,894 - BBR_RS13615 0.22 -0.4
827,963 - BBR_RS13615 0.32 -0.9
827,965 + BBR_RS13615 0.32 +0.1
827,965 + BBR_RS13615 0.32 +0.5
827,973 - BBR_RS13615 0.33 -2.6
828,016 + BBR_RS13615 0.39 -0.1
828,024 - BBR_RS13615 0.40 -0.2
828,024 - BBR_RS13615 0.40 -0.6
828,030 + BBR_RS13615 0.41 -0.6
828,046 + BBR_RS13615 0.43 +1.4
828,046 + BBR_RS13615 0.43 -0.7
828,089 + BBR_RS13615 0.49 -0.7
828,089 + BBR_RS13615 0.49 -0.2
828,097 - BBR_RS13615 0.50 +1.0
828,118 + BBR_RS13615 0.53 -0.1
828,119 + BBR_RS13615 0.53 -1.6
828,137 - BBR_RS13615 0.56 -1.7
828,143 + BBR_RS13615 0.57 +1.6
828,155 - BBR_RS13615 0.58 -0.3
828,197 - BBR_RS13615 0.64 -1.0
828,197 - BBR_RS13615 0.64 +0.7
828,214 + BBR_RS13615 0.67 -0.2
828,234 - BBR_RS13615 0.69 -0.7
828,253 - BBR_RS13615 0.72 -0.8
828,283 + BBR_RS13615 0.76 -0.8
828,311 + BBR_RS13615 0.80 +0.2
828,319 + BBR_RS13615 0.81 -0.9
828,337 + BBR_RS13615 0.84 +1.1
828,347 + BBR_RS13615 0.85 -0.2
828,347 + BBR_RS13615 0.85 +1.1
828,358 - BBR_RS13615 0.87 +0.7
828,364 + BBR_RS13615 0.87 -0.7
828,372 - BBR_RS13615 0.89 -0.3
828,429 - +0.2
828,429 - -0.0
828,469 - -1.2
828,469 - +0.4
828,469 - +1.4
828,506 - +0.4
828,506 - -0.2
828,539 + -0.0

Or see this region's nucleotide sequence