Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13245

Experiment: CDM1 without Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13240 and BBR_RS13245 are separated by 11 nucleotidesBBR_RS13245 and BBR_RS13250 overlap by 20 nucleotides BBR_RS13240: BBR_RS13240 - sugar ABC transporter substrate-binding protein, at 743,899 to 745,230 _RS13240 BBR_RS13245: BBR_RS13245 - LacI family transcriptional regulator, at 745,242 to 746,486 _RS13245 BBR_RS13250: BBR_RS13250 - alpha-glucosidase, at 746,467 to 748,281 _RS13250 Position (kb) 745 746 747Strain fitness (log2 ratio) -2 -1 0 1 2 3at 744.245 kb on + strand, within BBR_RS13240at 744.245 kb on + strand, within BBR_RS13240at 744.246 kb on + strand, within BBR_RS13240at 744.254 kb on - strand, within BBR_RS13240at 744.255 kb on + strand, within BBR_RS13240at 744.265 kb on - strand, within BBR_RS13240at 744.301 kb on + strand, within BBR_RS13240at 744.378 kb on - strand, within BBR_RS13240at 744.402 kb on + strand, within BBR_RS13240at 744.402 kb on + strand, within BBR_RS13240at 744.481 kb on + strand, within BBR_RS13240at 744.486 kb on + strand, within BBR_RS13240at 744.497 kb on + strand, within BBR_RS13240at 744.507 kb on + strand, within BBR_RS13240at 744.507 kb on + strand, within BBR_RS13240at 744.507 kb on + strand, within BBR_RS13240at 744.526 kb on - strand, within BBR_RS13240at 744.536 kb on - strand, within BBR_RS13240at 744.536 kb on - strand, within BBR_RS13240at 744.554 kb on + strand, within BBR_RS13240at 744.605 kb on + strand, within BBR_RS13240at 744.612 kb on + strand, within BBR_RS13240at 744.636 kb on - strand, within BBR_RS13240at 744.646 kb on + strand, within BBR_RS13240at 744.646 kb on + strand, within BBR_RS13240at 744.714 kb on - strand, within BBR_RS13240at 744.730 kb on + strand, within BBR_RS13240at 744.785 kb on + strand, within BBR_RS13240at 744.791 kb on + strand, within BBR_RS13240at 744.793 kb on + strand, within BBR_RS13240at 744.793 kb on - strand, within BBR_RS13240at 744.801 kb on - strand, within BBR_RS13240at 744.833 kb on - strand, within BBR_RS13240at 744.870 kb on - strand, within BBR_RS13240at 744.895 kb on + strand, within BBR_RS13240at 744.905 kb on + strand, within BBR_RS13240at 744.967 kb on - strand, within BBR_RS13240at 744.967 kb on - strand, within BBR_RS13240at 744.967 kb on - strand, within BBR_RS13240at 744.982 kb on - strand, within BBR_RS13240at 744.987 kb on - strand, within BBR_RS13240at 745.008 kb on - strand, within BBR_RS13240at 745.129 kb on + strandat 745.129 kb on + strandat 745.139 kb on - strandat 745.146 kb on - strandat 745.146 kb on - strandat 745.146 kb on - strandat 745.146 kb on - strandat 745.146 kb on - strandat 745.160 kb on + strandat 745.161 kb on + strandat 745.169 kb on - strandat 745.174 kb on - strandat 745.194 kb on + strandat 745.194 kb on + strandat 745.201 kb on + strandat 745.202 kb on - strandat 745.202 kb on - strandat 745.206 kb on + strandat 745.206 kb on + strandat 745.234 kb on + strandat 745.273 kb on - strandat 745.355 kb on - strandat 745.357 kb on + strandat 745.410 kb on + strand, within BBR_RS13245at 745.428 kb on + strand, within BBR_RS13245at 745.428 kb on + strand, within BBR_RS13245at 745.429 kb on - strand, within BBR_RS13245at 745.436 kb on - strand, within BBR_RS13245at 745.441 kb on - strand, within BBR_RS13245at 745.488 kb on - strand, within BBR_RS13245at 745.492 kb on + strand, within BBR_RS13245at 745.492 kb on + strand, within BBR_RS13245at 745.492 kb on + strand, within BBR_RS13245at 745.493 kb on + strand, within BBR_RS13245at 745.501 kb on - strand, within BBR_RS13245at 745.525 kb on + strand, within BBR_RS13245at 745.527 kb on + strand, within BBR_RS13245at 745.562 kb on - strand, within BBR_RS13245at 745.584 kb on + strand, within BBR_RS13245at 745.592 kb on - strand, within BBR_RS13245at 745.594 kb on - strand, within BBR_RS13245at 745.594 kb on - strand, within BBR_RS13245at 745.602 kb on - strand, within BBR_RS13245at 745.607 kb on - strand, within BBR_RS13245at 745.620 kb on + strand, within BBR_RS13245at 745.628 kb on - strand, within BBR_RS13245at 745.674 kb on + strand, within BBR_RS13245at 745.725 kb on - strand, within BBR_RS13245at 745.759 kb on + strand, within BBR_RS13245at 745.769 kb on + strand, within BBR_RS13245at 745.777 kb on - strand, within BBR_RS13245at 745.777 kb on - strand, within BBR_RS13245at 745.779 kb on + strand, within BBR_RS13245at 745.779 kb on + strand, within BBR_RS13245at 745.829 kb on + strand, within BBR_RS13245at 745.854 kb on + strand, within BBR_RS13245at 745.862 kb on - strand, within BBR_RS13245at 745.879 kb on + strand, within BBR_RS13245at 745.893 kb on + strand, within BBR_RS13245at 745.952 kb on + strand, within BBR_RS13245at 745.952 kb on + strand, within BBR_RS13245at 745.953 kb on + strand, within BBR_RS13245at 745.960 kb on - strand, within BBR_RS13245at 745.972 kb on - strand, within BBR_RS13245at 745.976 kb on + strand, within BBR_RS13245at 745.994 kb on + strand, within BBR_RS13245at 746.021 kb on - strand, within BBR_RS13245at 746.049 kb on + strand, within BBR_RS13245at 746.077 kb on + strand, within BBR_RS13245at 746.128 kb on + strand, within BBR_RS13245at 746.133 kb on + strand, within BBR_RS13245at 746.148 kb on + strand, within BBR_RS13245at 746.157 kb on - strand, within BBR_RS13245at 746.210 kb on + strand, within BBR_RS13245at 746.210 kb on + strand, within BBR_RS13245at 746.223 kb on + strand, within BBR_RS13245at 746.238 kb on - strand, within BBR_RS13245at 746.259 kb on + strand, within BBR_RS13245at 746.290 kb on - strand, within BBR_RS13245at 746.290 kb on - strand, within BBR_RS13245at 746.290 kb on - strand, within BBR_RS13245at 746.308 kb on + strand, within BBR_RS13245at 746.364 kb on + strandat 746.398 kb on + strandat 746.458 kb on - strandat 746.466 kb on + strandat 746.466 kb on + strandat 746.481 kb on - strandat 746.488 kb on + strandat 746.488 kb on + strandat 746.496 kb on - strandat 746.530 kb on - strandat 746.553 kb on + strandat 746.564 kb on + strandat 746.575 kb on + strandat 746.608 kb on - strandat 746.656 kb on + strand, within BBR_RS13250at 746.661 kb on + strand, within BBR_RS13250at 746.661 kb on + strand, within BBR_RS13250at 746.669 kb on - strand, within BBR_RS13250at 746.674 kb on - strand, within BBR_RS13250at 746.677 kb on + strand, within BBR_RS13250at 746.677 kb on + strand, within BBR_RS13250at 746.677 kb on + strand, within BBR_RS13250at 746.679 kb on + strand, within BBR_RS13250at 746.679 kb on + strand, within BBR_RS13250at 746.685 kb on - strand, within BBR_RS13250at 746.685 kb on - strand, within BBR_RS13250at 746.685 kb on - strand, within BBR_RS13250at 746.712 kb on - strand, within BBR_RS13250at 746.758 kb on - strand, within BBR_RS13250at 746.770 kb on - strand, within BBR_RS13250at 746.792 kb on - strand, within BBR_RS13250at 746.792 kb on - strand, within BBR_RS13250at 746.832 kb on - strand, within BBR_RS13250at 746.865 kb on + strand, within BBR_RS13250at 746.865 kb on + strand, within BBR_RS13250at 746.873 kb on - strand, within BBR_RS13250at 746.887 kb on + strand, within BBR_RS13250at 746.895 kb on - strand, within BBR_RS13250at 746.899 kb on - strand, within BBR_RS13250at 746.899 kb on - strand, within BBR_RS13250at 746.939 kb on + strand, within BBR_RS13250at 746.959 kb on + strand, within BBR_RS13250at 746.985 kb on + strand, within BBR_RS13250at 746.993 kb on + strand, within BBR_RS13250at 746.993 kb on - strand, within BBR_RS13250at 747.015 kb on - strand, within BBR_RS13250at 747.022 kb on - strand, within BBR_RS13250at 747.043 kb on + strand, within BBR_RS13250at 747.051 kb on - strand, within BBR_RS13250at 747.072 kb on - strand, within BBR_RS13250at 747.079 kb on + strand, within BBR_RS13250at 747.079 kb on + strand, within BBR_RS13250at 747.079 kb on + strand, within BBR_RS13250at 747.079 kb on + strand, within BBR_RS13250at 747.079 kb on + strand, within BBR_RS13250at 747.079 kb on + strand, within BBR_RS13250at 747.079 kb on + strand, within BBR_RS13250at 747.087 kb on - strand, within BBR_RS13250at 747.131 kb on - strand, within BBR_RS13250at 747.142 kb on + strand, within BBR_RS13250at 747.145 kb on - strand, within BBR_RS13250at 747.184 kb on + strand, within BBR_RS13250at 747.194 kb on + strand, within BBR_RS13250at 747.228 kb on + strand, within BBR_RS13250at 747.228 kb on + strand, within BBR_RS13250at 747.228 kb on + strand, within BBR_RS13250at 747.231 kb on - strand, within BBR_RS13250at 747.233 kb on + strand, within BBR_RS13250at 747.236 kb on - strand, within BBR_RS13250at 747.236 kb on - strand, within BBR_RS13250at 747.236 kb on - strand, within BBR_RS13250at 747.237 kb on - strand, within BBR_RS13250at 747.252 kb on - strand, within BBR_RS13250at 747.252 kb on - strand, within BBR_RS13250at 747.257 kb on - strand, within BBR_RS13250at 747.263 kb on + strand, within BBR_RS13250at 747.322 kb on - strand, within BBR_RS13250at 747.408 kb on + strand, within BBR_RS13250at 747.418 kb on + strand, within BBR_RS13250at 747.432 kb on - strand, within BBR_RS13250

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Arginine
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744,245 + BBR_RS13240 0.26 +0.6
744,245 + BBR_RS13240 0.26 -0.0
744,246 + BBR_RS13240 0.26 -0.2
744,254 - BBR_RS13240 0.27 -0.4
744,255 + BBR_RS13240 0.27 +0.2
744,265 - BBR_RS13240 0.27 +0.1
744,301 + BBR_RS13240 0.30 +1.0
744,378 - BBR_RS13240 0.36 -1.6
744,402 + BBR_RS13240 0.38 -0.5
744,402 + BBR_RS13240 0.38 +0.5
744,481 + BBR_RS13240 0.44 +0.4
744,486 + BBR_RS13240 0.44 +0.6
744,497 + BBR_RS13240 0.45 +0.6
744,507 + BBR_RS13240 0.46 +0.5
744,507 + BBR_RS13240 0.46 +0.3
744,507 + BBR_RS13240 0.46 -0.2
744,526 - BBR_RS13240 0.47 -0.2
744,536 - BBR_RS13240 0.48 -0.1
744,536 - BBR_RS13240 0.48 +0.2
744,554 + BBR_RS13240 0.49 -0.9
744,605 + BBR_RS13240 0.53 +0.8
744,612 + BBR_RS13240 0.54 -0.0
744,636 - BBR_RS13240 0.55 +1.6
744,646 + BBR_RS13240 0.56 +0.4
744,646 + BBR_RS13240 0.56 +0.2
744,714 - BBR_RS13240 0.61 +0.5
744,730 + BBR_RS13240 0.62 +0.8
744,785 + BBR_RS13240 0.67 -0.3
744,791 + BBR_RS13240 0.67 +1.9
744,793 + BBR_RS13240 0.67 +1.0
744,793 - BBR_RS13240 0.67 -0.4
744,801 - BBR_RS13240 0.68 +0.5
744,833 - BBR_RS13240 0.70 +0.6
744,870 - BBR_RS13240 0.73 -0.6
744,895 + BBR_RS13240 0.75 -0.1
744,905 + BBR_RS13240 0.76 +1.5
744,967 - BBR_RS13240 0.80 +2.2
744,967 - BBR_RS13240 0.80 +1.2
744,967 - BBR_RS13240 0.80 -0.3
744,982 - BBR_RS13240 0.81 -1.2
744,987 - BBR_RS13240 0.82 -0.5
745,008 - BBR_RS13240 0.83 +1.0
745,129 + +0.5
745,129 + -0.9
745,139 - +0.4
745,146 - -0.2
745,146 - +0.3
745,146 - -0.5
745,146 - -0.1
745,146 - -0.1
745,160 + +0.2
745,161 + +0.3
745,169 - -1.2
745,174 - -0.1
745,194 + -0.2
745,194 + +1.1
745,201 + +0.4
745,202 - -0.2
745,202 - +0.6
745,206 + +0.1
745,206 + -0.1
745,234 + +2.6
745,273 - -1.8
745,355 - -0.1
745,357 + +1.2
745,410 + BBR_RS13245 0.13 +1.1
745,428 + BBR_RS13245 0.15 +0.1
745,428 + BBR_RS13245 0.15 +0.7
745,429 - BBR_RS13245 0.15 +0.8
745,436 - BBR_RS13245 0.16 +1.1
745,441 - BBR_RS13245 0.16 +0.1
745,488 - BBR_RS13245 0.20 +0.8
745,492 + BBR_RS13245 0.20 +1.4
745,492 + BBR_RS13245 0.20 +0.5
745,492 + BBR_RS13245 0.20 +0.2
745,493 + BBR_RS13245 0.20 +0.8
745,501 - BBR_RS13245 0.21 -0.7
745,525 + BBR_RS13245 0.23 +0.6
745,527 + BBR_RS13245 0.23 +0.1
745,562 - BBR_RS13245 0.26 +1.2
745,584 + BBR_RS13245 0.27 +0.7
745,592 - BBR_RS13245 0.28 +1.0
745,594 - BBR_RS13245 0.28 +0.7
745,594 - BBR_RS13245 0.28 +0.3
745,602 - BBR_RS13245 0.29 +1.6
745,607 - BBR_RS13245 0.29 +0.8
745,620 + BBR_RS13245 0.30 +0.9
745,628 - BBR_RS13245 0.31 -0.2
745,674 + BBR_RS13245 0.35 +0.9
745,725 - BBR_RS13245 0.39 -1.6
745,759 + BBR_RS13245 0.42 +1.1
745,769 + BBR_RS13245 0.42 +0.7
745,777 - BBR_RS13245 0.43 +0.3
745,777 - BBR_RS13245 0.43 -0.6
745,779 + BBR_RS13245 0.43 -0.0
745,779 + BBR_RS13245 0.43 +0.1
745,829 + BBR_RS13245 0.47 +0.6
745,854 + BBR_RS13245 0.49 +0.2
745,862 - BBR_RS13245 0.50 +0.4
745,879 + BBR_RS13245 0.51 -0.2
745,893 + BBR_RS13245 0.52 +0.7
745,952 + BBR_RS13245 0.57 -0.5
745,952 + BBR_RS13245 0.57 -0.3
745,953 + BBR_RS13245 0.57 -0.1
745,960 - BBR_RS13245 0.58 -1.1
745,972 - BBR_RS13245 0.59 +1.3
745,976 + BBR_RS13245 0.59 +0.0
745,994 + BBR_RS13245 0.60 +0.4
746,021 - BBR_RS13245 0.63 +0.2
746,049 + BBR_RS13245 0.65 +0.6
746,077 + BBR_RS13245 0.67 +0.4
746,128 + BBR_RS13245 0.71 -0.4
746,133 + BBR_RS13245 0.72 +0.4
746,148 + BBR_RS13245 0.73 +0.3
746,157 - BBR_RS13245 0.73 -2.1
746,210 + BBR_RS13245 0.78 +0.8
746,210 + BBR_RS13245 0.78 -0.7
746,223 + BBR_RS13245 0.79 +0.3
746,238 - BBR_RS13245 0.80 +1.1
746,259 + BBR_RS13245 0.82 +0.9
746,290 - BBR_RS13245 0.84 +0.2
746,290 - BBR_RS13245 0.84 +0.9
746,290 - BBR_RS13245 0.84 -0.3
746,308 + BBR_RS13245 0.86 -1.0
746,364 + -0.7
746,398 + -0.3
746,458 - +0.8
746,466 + -1.8
746,466 + -0.1
746,481 - -2.1
746,488 + -1.1
746,488 + -1.6
746,496 - -0.2
746,530 - +0.5
746,553 + +1.0
746,564 + +0.3
746,575 + +0.0
746,608 - +0.5
746,656 + BBR_RS13250 0.10 +0.3
746,661 + BBR_RS13250 0.11 +0.8
746,661 + BBR_RS13250 0.11 +0.7
746,669 - BBR_RS13250 0.11 -0.0
746,674 - BBR_RS13250 0.11 +0.5
746,677 + BBR_RS13250 0.12 +0.5
746,677 + BBR_RS13250 0.12 +2.6
746,677 + BBR_RS13250 0.12 +0.8
746,679 + BBR_RS13250 0.12 -1.3
746,679 + BBR_RS13250 0.12 +1.4
746,685 - BBR_RS13250 0.12 -0.2
746,685 - BBR_RS13250 0.12 -0.6
746,685 - BBR_RS13250 0.12 -0.2
746,712 - BBR_RS13250 0.13 -0.6
746,758 - BBR_RS13250 0.16 +0.1
746,770 - BBR_RS13250 0.17 -0.2
746,792 - BBR_RS13250 0.18 -0.9
746,792 - BBR_RS13250 0.18 -0.8
746,832 - BBR_RS13250 0.20 -0.3
746,865 + BBR_RS13250 0.22 +0.9
746,865 + BBR_RS13250 0.22 +0.6
746,873 - BBR_RS13250 0.22 -0.1
746,887 + BBR_RS13250 0.23 +2.0
746,895 - BBR_RS13250 0.24 -1.9
746,899 - BBR_RS13250 0.24 +1.2
746,899 - BBR_RS13250 0.24 +0.9
746,939 + BBR_RS13250 0.26 +0.1
746,959 + BBR_RS13250 0.27 +1.3
746,985 + BBR_RS13250 0.29 +0.3
746,993 + BBR_RS13250 0.29 +0.5
746,993 - BBR_RS13250 0.29 +0.2
747,015 - BBR_RS13250 0.30 +1.0
747,022 - BBR_RS13250 0.31 -0.3
747,043 + BBR_RS13250 0.32 -0.9
747,051 - BBR_RS13250 0.32 -1.0
747,072 - BBR_RS13250 0.33 -2.0
747,079 + BBR_RS13250 0.34 -0.8
747,079 + BBR_RS13250 0.34 -0.6
747,079 + BBR_RS13250 0.34 +0.9
747,079 + BBR_RS13250 0.34 +1.1
747,079 + BBR_RS13250 0.34 +1.5
747,079 + BBR_RS13250 0.34 -0.7
747,079 + BBR_RS13250 0.34 +0.9
747,087 - BBR_RS13250 0.34 -0.8
747,131 - BBR_RS13250 0.37 -0.1
747,142 + BBR_RS13250 0.37 +1.1
747,145 - BBR_RS13250 0.37 -0.7
747,184 + BBR_RS13250 0.40 -0.8
747,194 + BBR_RS13250 0.40 +0.8
747,228 + BBR_RS13250 0.42 -0.5
747,228 + BBR_RS13250 0.42 +0.2
747,228 + BBR_RS13250 0.42 -0.4
747,231 - BBR_RS13250 0.42 +0.4
747,233 + BBR_RS13250 0.42 -0.0
747,236 - BBR_RS13250 0.42 +1.1
747,236 - BBR_RS13250 0.42 +1.1
747,236 - BBR_RS13250 0.42 +3.1
747,237 - BBR_RS13250 0.42 -0.8
747,252 - BBR_RS13250 0.43 +0.1
747,252 - BBR_RS13250 0.43 +0.2
747,257 - BBR_RS13250 0.44 +0.1
747,263 + BBR_RS13250 0.44 +0.3
747,322 - BBR_RS13250 0.47 +0.3
747,408 + BBR_RS13250 0.52 -1.0
747,418 + BBR_RS13250 0.52 -0.1
747,432 - BBR_RS13250 0.53 -1.0

Or see this region's nucleotide sequence