Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21585 and ABZR87_RS21590 are separated by 20 nucleotides ABZR87_RS21590 and ABZR87_RS21595 are separated by 74 nucleotides ABZR87_RS21595 and ABZR87_RS21600 are separated by 97 nucleotides ABZR87_RS21600 and ABZR87_RS21605 are separated by 0 nucleotides
ABZR87_RS21585: ABZR87_RS21585 - multidrug efflux SMR transporter, at 1,225,695 to 1,226,024
_RS21585
ABZR87_RS21590: ABZR87_RS21590 - NAD(P)H-dependent oxidoreductase, at 1,226,045 to 1,226,689
_RS21590
ABZR87_RS21595: ABZR87_RS21595 - Rrf2 family transcriptional regulator, at 1,226,764 to 1,227,201
_RS21595
ABZR87_RS21600: ABZR87_RS21600 - NAD(P)-dependent oxidoreductase, at 1,227,299 to 1,227,910
_RS21600
ABZR87_RS21605: ABZR87_RS21605 - hypothetical protein, at 1,227,911 to 1,228,519
_RS21605
Position (kb)
1226
1227
1228 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1225.879 kb on - strand, within ABZR87_RS21585 at 1225.879 kb on - strand, within ABZR87_RS21585 at 1226.060 kb on + strand at 1226.060 kb on + strand at 1226.060 kb on + strand at 1226.061 kb on - strand at 1226.061 kb on - strand at 1226.130 kb on - strand, within ABZR87_RS21590 at 1226.324 kb on + strand, within ABZR87_RS21590 at 1226.324 kb on + strand, within ABZR87_RS21590 at 1226.325 kb on - strand, within ABZR87_RS21590 at 1226.325 kb on - strand, within ABZR87_RS21590 at 1226.474 kb on + strand, within ABZR87_RS21590 at 1226.509 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.734 kb on + strand at 1226.758 kb on - strand at 1226.769 kb on + strand at 1226.769 kb on + strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.799 kb on + strand at 1227.002 kb on + strand, within ABZR87_RS21595 at 1227.220 kb on + strand at 1227.257 kb on + strand at 1227.259 kb on + strand at 1227.497 kb on + strand, within ABZR87_RS21600 at 1227.497 kb on + strand, within ABZR87_RS21600 at 1227.498 kb on - strand, within ABZR87_RS21600 at 1227.498 kb on - strand, within ABZR87_RS21600 at 1227.653 kb on + strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.763 kb on + strand, within ABZR87_RS21600 at 1227.990 kb on + strand, within ABZR87_RS21605 at 1227.991 kb on - strand, within ABZR87_RS21605
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 1,225,879 - ABZR87_RS21585 0.56 -0.6 1,225,879 - ABZR87_RS21585 0.56 -0.7 1,226,060 + +1.5 1,226,060 + +0.3 1,226,060 + -0.4 1,226,061 - +0.5 1,226,061 - +0.2 1,226,130 - ABZR87_RS21590 0.13 -0.3 1,226,324 + ABZR87_RS21590 0.43 +0.0 1,226,324 + ABZR87_RS21590 0.43 +0.4 1,226,325 - ABZR87_RS21590 0.43 -1.1 1,226,325 - ABZR87_RS21590 0.43 -0.0 1,226,474 + ABZR87_RS21590 0.67 -0.1 1,226,509 - ABZR87_RS21590 0.72 +0.1 1,226,547 - ABZR87_RS21590 0.78 -0.4 1,226,547 - ABZR87_RS21590 0.78 -0.1 1,226,547 - ABZR87_RS21590 0.78 -0.4 1,226,734 + -2.6 1,226,758 - -2.4 1,226,769 + +0.0 1,226,769 + +0.1 1,226,770 - +0.1 1,226,770 - -0.3 1,226,770 - +0.1 1,226,770 - +0.1 1,226,799 + -0.9 1,227,002 + ABZR87_RS21595 0.54 -0.3 1,227,220 + +0.5 1,227,257 + +0.7 1,227,259 + -0.8 1,227,497 + ABZR87_RS21600 0.32 -0.2 1,227,497 + ABZR87_RS21600 0.32 +0.1 1,227,498 - ABZR87_RS21600 0.33 +1.9 1,227,498 - ABZR87_RS21600 0.33 -0.5 1,227,653 + ABZR87_RS21600 0.58 -0.7 1,227,654 - ABZR87_RS21600 0.58 +0.1 1,227,654 - ABZR87_RS21600 0.58 +0.2 1,227,654 - ABZR87_RS21600 0.58 -0.6 1,227,763 + ABZR87_RS21600 0.76 -0.6 1,227,990 + ABZR87_RS21605 0.13 +0.4 1,227,991 - ABZR87_RS21605 0.13 +0.0
Or see this region's nucleotide sequence