Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18885

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18880 and ABZR87_RS18885 are separated by 304 nucleotidesABZR87_RS18885 and ABZR87_RS18890 are separated by 180 nucleotides ABZR87_RS18880: ABZR87_RS18880 - FAD-dependent oxidoreductase, at 588,860 to 590,086 _RS18880 ABZR87_RS18885: ABZR87_RS18885 - nitrate reductase, at 590,391 to 593,126 _RS18885 ABZR87_RS18890: ABZR87_RS18890 - hypothetical protein, at 593,307 to 594,866 _RS18890 Position (kb) 590 591 592 593 594Strain fitness (log2 ratio) -2 -1 0 1at 589.587 kb on + strand, within ABZR87_RS18880at 589.587 kb on + strand, within ABZR87_RS18880at 589.587 kb on + strand, within ABZR87_RS18880at 589.667 kb on + strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.678 kb on + strand, within ABZR87_RS18880at 589.796 kb on + strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.798 kb on + strand, within ABZR87_RS18880at 589.798 kb on + strand, within ABZR87_RS18880at 589.847 kb on + strand, within ABZR87_RS18880at 589.848 kb on - strand, within ABZR87_RS18880at 589.848 kb on - strand, within ABZR87_RS18880at 589.919 kb on + strand, within ABZR87_RS18880at 589.995 kb on - strandat 590.125 kb on + strandat 590.150 kb on + strandat 590.151 kb on - strandat 590.160 kb on - strandat 590.416 kb on + strandat 590.416 kb on + strandat 590.445 kb on + strandat 590.446 kb on - strandat 590.548 kb on + strandat 590.548 kb on + strandat 590.742 kb on + strand, within ABZR87_RS18885at 590.742 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.773 kb on - strand, within ABZR87_RS18885at 590.773 kb on - strand, within ABZR87_RS18885at 590.773 kb on - strand, within ABZR87_RS18885at 590.775 kb on + strand, within ABZR87_RS18885at 590.775 kb on + strand, within ABZR87_RS18885at 590.776 kb on - strand, within ABZR87_RS18885at 590.825 kb on + strand, within ABZR87_RS18885at 590.829 kb on - strand, within ABZR87_RS18885at 590.904 kb on + strand, within ABZR87_RS18885at 590.904 kb on + strand, within ABZR87_RS18885at 590.904 kb on + strand, within ABZR87_RS18885at 590.905 kb on - strand, within ABZR87_RS18885at 590.905 kb on - strand, within ABZR87_RS18885at 591.279 kb on + strand, within ABZR87_RS18885at 591.279 kb on + strand, within ABZR87_RS18885at 591.279 kb on + strand, within ABZR87_RS18885at 591.279 kb on + strand, within ABZR87_RS18885at 591.280 kb on - strand, within ABZR87_RS18885at 591.280 kb on - strand, within ABZR87_RS18885at 592.045 kb on - strand, within ABZR87_RS18885at 592.045 kb on - strand, within ABZR87_RS18885at 592.045 kb on - strand, within ABZR87_RS18885at 592.653 kb on + strand, within ABZR87_RS18885at 592.653 kb on + strand, within ABZR87_RS18885at 592.653 kb on + strand, within ABZR87_RS18885at 592.654 kb on - strand, within ABZR87_RS18885at 592.654 kb on - strand, within ABZR87_RS18885at 592.654 kb on - strand, within ABZR87_RS18885at 592.746 kb on + strand, within ABZR87_RS18885at 593.204 kb on + strandat 593.204 kb on + strandat 593.205 kb on - strandat 593.205 kb on - strandat 593.205 kb on - strandat 593.264 kb on - strandat 593.284 kb on + strandat 593.284 kb on + strandat 593.285 kb on - strandat 593.285 kb on - strandat 593.292 kb on - strandat 593.308 kb on + strandat 593.308 kb on + strandat 593.308 kb on + strandat 593.308 kb on + strandat 593.308 kb on + strandat 593.309 kb on - strandat 593.309 kb on - strandat 593.309 kb on - strandat 593.309 kb on - strandat 593.309 kb on - strandat 593.345 kb on - strandat 593.535 kb on + strand, within ABZR87_RS18890at 593.535 kb on + strand, within ABZR87_RS18890at 593.535 kb on + strand, within ABZR87_RS18890at 593.535 kb on + strand, within ABZR87_RS18890at 593.535 kb on + strand, within ABZR87_RS18890at 593.535 kb on + strand, within ABZR87_RS18890at 593.536 kb on - strand, within ABZR87_RS18890at 593.536 kb on - strand, within ABZR87_RS18890at 593.671 kb on + strand, within ABZR87_RS18890at 593.672 kb on - strand, within ABZR87_RS18890at 593.794 kb on + strand, within ABZR87_RS18890at 593.794 kb on + strand, within ABZR87_RS18890at 593.794 kb on + strand, within ABZR87_RS18890at 593.795 kb on - strand, within ABZR87_RS18890at 593.795 kb on - strand, within ABZR87_RS18890at 593.908 kb on + strand, within ABZR87_RS18890at 593.944 kb on + strand, within ABZR87_RS18890at 593.944 kb on + strand, within ABZR87_RS18890at 593.944 kb on + strand, within ABZR87_RS18890at 593.968 kb on + strand, within ABZR87_RS18890

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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589,587 + ABZR87_RS18880 0.59 +0.2
589,587 + ABZR87_RS18880 0.59 +0.5
589,587 + ABZR87_RS18880 0.59 +0.0
589,667 + ABZR87_RS18880 0.66 +0.1
589,668 - ABZR87_RS18880 0.66 +0.1
589,668 - ABZR87_RS18880 0.66 +0.4
589,668 - ABZR87_RS18880 0.66 -0.0
589,668 - ABZR87_RS18880 0.66 +0.0
589,668 - ABZR87_RS18880 0.66 -0.2
589,678 + ABZR87_RS18880 0.67 -0.6
589,796 + ABZR87_RS18880 0.76 -0.9
589,797 - ABZR87_RS18880 0.76 -0.7
589,797 - ABZR87_RS18880 0.76 -0.0
589,797 - ABZR87_RS18880 0.76 -0.3
589,797 - ABZR87_RS18880 0.76 +1.0
589,797 - ABZR87_RS18880 0.76 +0.1
589,798 + ABZR87_RS18880 0.76 -1.0
589,798 + ABZR87_RS18880 0.76 -0.7
589,847 + ABZR87_RS18880 0.80 +0.2
589,848 - ABZR87_RS18880 0.81 +0.0
589,848 - ABZR87_RS18880 0.81 -0.3
589,919 + ABZR87_RS18880 0.86 +0.7
589,995 - +0.3
590,125 + -0.7
590,150 + -0.8
590,151 - -0.0
590,160 - +0.5
590,416 + +0.2
590,416 + -0.3
590,445 + -0.1
590,446 - +0.1
590,548 + -0.4
590,548 + -0.6
590,742 + ABZR87_RS18885 0.13 -0.1
590,742 + ABZR87_RS18885 0.13 +1.0
590,772 + ABZR87_RS18885 0.14 -0.3
590,772 + ABZR87_RS18885 0.14 -0.1
590,772 + ABZR87_RS18885 0.14 +0.1
590,772 + ABZR87_RS18885 0.14 +0.1
590,772 + ABZR87_RS18885 0.14 +0.4
590,772 + ABZR87_RS18885 0.14 +0.4
590,773 - ABZR87_RS18885 0.14 +0.0
590,773 - ABZR87_RS18885 0.14 +0.0
590,773 - ABZR87_RS18885 0.14 -0.6
590,775 + ABZR87_RS18885 0.14 +0.4
590,775 + ABZR87_RS18885 0.14 +0.3
590,776 - ABZR87_RS18885 0.14 +0.1
590,825 + ABZR87_RS18885 0.16 -0.6
590,829 - ABZR87_RS18885 0.16 +0.1
590,904 + ABZR87_RS18885 0.19 -1.2
590,904 + ABZR87_RS18885 0.19 -0.0
590,904 + ABZR87_RS18885 0.19 -0.3
590,905 - ABZR87_RS18885 0.19 -0.5
590,905 - ABZR87_RS18885 0.19 +0.4
591,279 + ABZR87_RS18885 0.32 +0.7
591,279 + ABZR87_RS18885 0.32 +0.7
591,279 + ABZR87_RS18885 0.32 -0.9
591,279 + ABZR87_RS18885 0.32 +0.5
591,280 - ABZR87_RS18885 0.32 +0.4
591,280 - ABZR87_RS18885 0.32 -1.0
592,045 - ABZR87_RS18885 0.60 -0.4
592,045 - ABZR87_RS18885 0.60 +0.3
592,045 - ABZR87_RS18885 0.60 +0.9
592,653 + ABZR87_RS18885 0.83 +0.2
592,653 + ABZR87_RS18885 0.83 +0.4
592,653 + ABZR87_RS18885 0.83 +0.5
592,654 - ABZR87_RS18885 0.83 +0.6
592,654 - ABZR87_RS18885 0.83 +0.2
592,654 - ABZR87_RS18885 0.83 -0.1
592,746 + ABZR87_RS18885 0.86 +0.2
593,204 + -1.6
593,204 + -0.5
593,205 - -0.1
593,205 - +0.2
593,205 - -0.2
593,264 - -0.3
593,284 + -0.6
593,284 + -0.0
593,285 - -0.3
593,285 - -0.4
593,292 - +0.3
593,308 + +0.3
593,308 + -0.2
593,308 + -0.3
593,308 + +1.5
593,308 + -0.5
593,309 - +0.1
593,309 - +0.1
593,309 - -0.7
593,309 - -0.1
593,309 - +0.2
593,345 - -0.1
593,535 + ABZR87_RS18890 0.15 +1.3
593,535 + ABZR87_RS18890 0.15 +0.5
593,535 + ABZR87_RS18890 0.15 +0.0
593,535 + ABZR87_RS18890 0.15 +0.8
593,535 + ABZR87_RS18890 0.15 +0.2
593,535 + ABZR87_RS18890 0.15 -1.9
593,536 - ABZR87_RS18890 0.15 +0.8
593,536 - ABZR87_RS18890 0.15 +0.2
593,671 + ABZR87_RS18890 0.23 +0.5
593,672 - ABZR87_RS18890 0.23 -0.6
593,794 + ABZR87_RS18890 0.31 -0.2
593,794 + ABZR87_RS18890 0.31 +0.2
593,794 + ABZR87_RS18890 0.31 +1.0
593,795 - ABZR87_RS18890 0.31 +0.5
593,795 - ABZR87_RS18890 0.31 -0.4
593,908 + ABZR87_RS18890 0.39 -1.5
593,944 + ABZR87_RS18890 0.41 -0.6
593,944 + ABZR87_RS18890 0.41 +0.3
593,944 + ABZR87_RS18890 0.41 +0.4
593,968 + ABZR87_RS18890 0.42 -0.3

Or see this region's nucleotide sequence