Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18880

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS18870 and ABZR87_RS18875 are separated by 23 nucleotidesABZR87_RS18875 and ABZR87_RS18880 are separated by 2 nucleotidesABZR87_RS18880 and ABZR87_RS18885 are separated by 304 nucleotides ABZR87_RS18870: ABZR87_RS18870 - nitrite reductase large subunit NirB, at 585,940 to 588,495 _RS18870 ABZR87_RS18875: ABZR87_RS18875 - nitrite reductase small subunit NirD, at 588,519 to 588,857 _RS18875 ABZR87_RS18880: ABZR87_RS18880 - FAD-dependent oxidoreductase, at 588,860 to 590,086 _RS18880 ABZR87_RS18885: ABZR87_RS18885 - nitrate reductase, at 590,391 to 593,126 _RS18885 Position (kb) 588 589 590 591Strain fitness (log2 ratio) -1 0 1at 587.929 kb on + strand, within ABZR87_RS18870at 587.930 kb on - strand, within ABZR87_RS18870at 587.930 kb on - strand, within ABZR87_RS18870at 588.049 kb on + strand, within ABZR87_RS18870at 588.049 kb on + strand, within ABZR87_RS18870at 588.049 kb on + strand, within ABZR87_RS18870at 588.049 kb on + strand, within ABZR87_RS18870at 588.049 kb on + strand, within ABZR87_RS18870at 588.130 kb on + strand, within ABZR87_RS18870at 588.130 kb on + strand, within ABZR87_RS18870at 588.130 kb on + strand, within ABZR87_RS18870at 588.131 kb on - strand, within ABZR87_RS18870at 588.131 kb on - strand, within ABZR87_RS18870at 588.131 kb on - strand, within ABZR87_RS18870at 588.154 kb on + strand, within ABZR87_RS18870at 588.154 kb on + strand, within ABZR87_RS18870at 588.154 kb on + strand, within ABZR87_RS18870at 588.155 kb on - strand, within ABZR87_RS18870at 588.224 kb on - strand, within ABZR87_RS18870at 588.304 kb on + strandat 588.305 kb on - strandat 588.305 kb on - strandat 588.305 kb on - strandat 588.305 kb on - strandat 588.648 kb on + strand, within ABZR87_RS18875at 588.649 kb on - strand, within ABZR87_RS18875at 588.663 kb on + strand, within ABZR87_RS18875at 588.663 kb on + strand, within ABZR87_RS18875at 588.664 kb on - strand, within ABZR87_RS18875at 588.840 kb on - strandat 588.992 kb on + strand, within ABZR87_RS18880at 588.993 kb on - strand, within ABZR87_RS18880at 588.993 kb on - strand, within ABZR87_RS18880at 589.070 kb on + strand, within ABZR87_RS18880at 589.071 kb on - strand, within ABZR87_RS18880at 589.587 kb on + strand, within ABZR87_RS18880at 589.587 kb on + strand, within ABZR87_RS18880at 589.587 kb on + strand, within ABZR87_RS18880at 589.667 kb on + strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.668 kb on - strand, within ABZR87_RS18880at 589.678 kb on + strand, within ABZR87_RS18880at 589.796 kb on + strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.797 kb on - strand, within ABZR87_RS18880at 589.798 kb on + strand, within ABZR87_RS18880at 589.798 kb on + strand, within ABZR87_RS18880at 589.847 kb on + strand, within ABZR87_RS18880at 589.848 kb on - strand, within ABZR87_RS18880at 589.848 kb on - strand, within ABZR87_RS18880at 589.919 kb on + strand, within ABZR87_RS18880at 589.995 kb on - strandat 590.125 kb on + strandat 590.150 kb on + strandat 590.151 kb on - strandat 590.160 kb on - strandat 590.416 kb on + strandat 590.416 kb on + strandat 590.445 kb on + strandat 590.446 kb on - strandat 590.548 kb on + strandat 590.548 kb on + strandat 590.742 kb on + strand, within ABZR87_RS18885at 590.742 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.772 kb on + strand, within ABZR87_RS18885at 590.773 kb on - strand, within ABZR87_RS18885at 590.773 kb on - strand, within ABZR87_RS18885at 590.773 kb on - strand, within ABZR87_RS18885at 590.775 kb on + strand, within ABZR87_RS18885at 590.775 kb on + strand, within ABZR87_RS18885at 590.776 kb on - strand, within ABZR87_RS18885at 590.825 kb on + strand, within ABZR87_RS18885at 590.829 kb on - strand, within ABZR87_RS18885at 590.904 kb on + strand, within ABZR87_RS18885at 590.904 kb on + strand, within ABZR87_RS18885at 590.904 kb on + strand, within ABZR87_RS18885at 590.905 kb on - strand, within ABZR87_RS18885at 590.905 kb on - strand, within ABZR87_RS18885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
587,929 + ABZR87_RS18870 0.78 -0.6
587,930 - ABZR87_RS18870 0.78 -0.2
587,930 - ABZR87_RS18870 0.78 -0.1
588,049 + ABZR87_RS18870 0.83 -0.2
588,049 + ABZR87_RS18870 0.83 -0.0
588,049 + ABZR87_RS18870 0.83 +0.3
588,049 + ABZR87_RS18870 0.83 +0.1
588,049 + ABZR87_RS18870 0.83 -0.4
588,130 + ABZR87_RS18870 0.86 -0.2
588,130 + ABZR87_RS18870 0.86 +0.1
588,130 + ABZR87_RS18870 0.86 -0.2
588,131 - ABZR87_RS18870 0.86 -0.1
588,131 - ABZR87_RS18870 0.86 -0.0
588,131 - ABZR87_RS18870 0.86 +0.3
588,154 + ABZR87_RS18870 0.87 +0.1
588,154 + ABZR87_RS18870 0.87 -0.2
588,154 + ABZR87_RS18870 0.87 -0.5
588,155 - ABZR87_RS18870 0.87 +0.1
588,224 - ABZR87_RS18870 0.89 +0.5
588,304 + -1.1
588,305 - +0.5
588,305 - -0.0
588,305 - -0.2
588,305 - +0.1
588,648 + ABZR87_RS18875 0.38 -0.4
588,649 - ABZR87_RS18875 0.38 +0.5
588,663 + ABZR87_RS18875 0.42 -0.5
588,663 + ABZR87_RS18875 0.42 +0.1
588,664 - ABZR87_RS18875 0.43 -0.2
588,840 - +0.9
588,992 + ABZR87_RS18880 0.11 -0.4
588,993 - ABZR87_RS18880 0.11 +0.9
588,993 - ABZR87_RS18880 0.11 +0.1
589,070 + ABZR87_RS18880 0.17 -0.5
589,071 - ABZR87_RS18880 0.17 -0.1
589,587 + ABZR87_RS18880 0.59 +0.2
589,587 + ABZR87_RS18880 0.59 +0.5
589,587 + ABZR87_RS18880 0.59 +0.0
589,667 + ABZR87_RS18880 0.66 +0.1
589,668 - ABZR87_RS18880 0.66 +0.1
589,668 - ABZR87_RS18880 0.66 +0.4
589,668 - ABZR87_RS18880 0.66 -0.0
589,668 - ABZR87_RS18880 0.66 +0.0
589,668 - ABZR87_RS18880 0.66 -0.2
589,678 + ABZR87_RS18880 0.67 -0.6
589,796 + ABZR87_RS18880 0.76 -0.9
589,797 - ABZR87_RS18880 0.76 -0.7
589,797 - ABZR87_RS18880 0.76 -0.0
589,797 - ABZR87_RS18880 0.76 -0.3
589,797 - ABZR87_RS18880 0.76 +1.0
589,797 - ABZR87_RS18880 0.76 +0.1
589,798 + ABZR87_RS18880 0.76 -1.0
589,798 + ABZR87_RS18880 0.76 -0.7
589,847 + ABZR87_RS18880 0.80 +0.2
589,848 - ABZR87_RS18880 0.81 +0.0
589,848 - ABZR87_RS18880 0.81 -0.3
589,919 + ABZR87_RS18880 0.86 +0.7
589,995 - +0.3
590,125 + -0.7
590,150 + -0.8
590,151 - -0.0
590,160 - +0.5
590,416 + +0.2
590,416 + -0.3
590,445 + -0.1
590,446 - +0.1
590,548 + -0.4
590,548 + -0.6
590,742 + ABZR87_RS18885 0.13 -0.1
590,742 + ABZR87_RS18885 0.13 +1.0
590,772 + ABZR87_RS18885 0.14 -0.3
590,772 + ABZR87_RS18885 0.14 -0.1
590,772 + ABZR87_RS18885 0.14 +0.1
590,772 + ABZR87_RS18885 0.14 +0.1
590,772 + ABZR87_RS18885 0.14 +0.4
590,772 + ABZR87_RS18885 0.14 +0.4
590,773 - ABZR87_RS18885 0.14 +0.0
590,773 - ABZR87_RS18885 0.14 +0.0
590,773 - ABZR87_RS18885 0.14 -0.6
590,775 + ABZR87_RS18885 0.14 +0.4
590,775 + ABZR87_RS18885 0.14 +0.3
590,776 - ABZR87_RS18885 0.14 +0.1
590,825 + ABZR87_RS18885 0.16 -0.6
590,829 - ABZR87_RS18885 0.16 +0.1
590,904 + ABZR87_RS18885 0.19 -1.2
590,904 + ABZR87_RS18885 0.19 -0.0
590,904 + ABZR87_RS18885 0.19 -0.3
590,905 - ABZR87_RS18885 0.19 -0.5
590,905 - ABZR87_RS18885 0.19 +0.4

Or see this region's nucleotide sequence