Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17845

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17840 and ABZR87_RS17845 are separated by 148 nucleotidesABZR87_RS17845 and ABZR87_RS17850 overlap by 8 nucleotidesABZR87_RS17850 and ABZR87_RS17855 are separated by 9 nucleotides ABZR87_RS17840: ABZR87_RS17840 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 360,931 to 361,929 _RS17840 ABZR87_RS17845: ABZR87_RS17845 - Crp/Fnr family transcriptional regulator, at 362,078 to 362,782 _RS17845 ABZR87_RS17850: ABZR87_RS17850 - 2-hydroxychromene-2-carboxylate isomerase, at 362,775 to 363,410 _RS17850 ABZR87_RS17855: ABZR87_RS17855 - 3-oxoacid CoA-transferase subunit B, at 363,420 to 364,094 _RS17855 Position (kb) 362 363Strain fitness (log2 ratio) -2 -1 0 1at 361.079 kb on + strand, within ABZR87_RS17840at 361.080 kb on - strand, within ABZR87_RS17840at 361.080 kb on - strand, within ABZR87_RS17840at 361.080 kb on - strand, within ABZR87_RS17840at 361.080 kb on - strand, within ABZR87_RS17840at 361.084 kb on - strand, within ABZR87_RS17840at 361.187 kb on + strand, within ABZR87_RS17840at 361.187 kb on + strand, within ABZR87_RS17840at 361.187 kb on + strand, within ABZR87_RS17840at 361.187 kb on + strand, within ABZR87_RS17840at 361.188 kb on - strand, within ABZR87_RS17840at 361.277 kb on + strand, within ABZR87_RS17840at 361.278 kb on - strand, within ABZR87_RS17840at 361.278 kb on - strand, within ABZR87_RS17840at 361.340 kb on + strand, within ABZR87_RS17840at 361.358 kb on + strand, within ABZR87_RS17840at 361.358 kb on + strand, within ABZR87_RS17840at 361.358 kb on + strand, within ABZR87_RS17840at 361.359 kb on - strand, within ABZR87_RS17840at 361.374 kb on + strand, within ABZR87_RS17840at 361.520 kb on + strand, within ABZR87_RS17840at 361.521 kb on - strand, within ABZR87_RS17840at 361.521 kb on - strand, within ABZR87_RS17840at 361.821 kb on - strand, within ABZR87_RS17840at 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.917 kb on + strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.918 kb on - strandat 361.994 kb on + strandat 361.994 kb on + strandat 361.994 kb on + strandat 361.995 kb on - strandat 361.995 kb on - strandat 362.025 kb on - strandat 362.025 kb on - strandat 362.064 kb on + strandat 362.065 kb on - strandat 362.088 kb on + strandat 362.088 kb on + strandat 362.089 kb on - strandat 362.089 kb on - strandat 362.089 kb on - strandat 362.089 kb on - strandat 362.130 kb on + strandat 362.256 kb on + strand, within ABZR87_RS17845at 362.326 kb on - strand, within ABZR87_RS17845at 362.326 kb on - strand, within ABZR87_RS17845at 362.472 kb on + strand, within ABZR87_RS17845at 362.725 kb on + strandat 363.077 kb on + strand, within ABZR87_RS17850at 363.077 kb on + strand, within ABZR87_RS17850at 363.078 kb on - strand, within ABZR87_RS17850at 363.078 kb on - strand, within ABZR87_RS17850at 363.078 kb on - strand, within ABZR87_RS17850at 363.220 kb on + strand, within ABZR87_RS17850at 363.676 kb on + strand, within ABZR87_RS17855

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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361,079 + ABZR87_RS17840 0.15 +1.4
361,080 - ABZR87_RS17840 0.15 +1.0
361,080 - ABZR87_RS17840 0.15 -1.5
361,080 - ABZR87_RS17840 0.15 -0.7
361,080 - ABZR87_RS17840 0.15 +1.2
361,084 - ABZR87_RS17840 0.15 -1.4
361,187 + ABZR87_RS17840 0.26 +0.1
361,187 + ABZR87_RS17840 0.26 -0.9
361,187 + ABZR87_RS17840 0.26 -0.2
361,187 + ABZR87_RS17840 0.26 -0.4
361,188 - ABZR87_RS17840 0.26 -0.1
361,277 + ABZR87_RS17840 0.35 -0.8
361,278 - ABZR87_RS17840 0.35 +0.5
361,278 - ABZR87_RS17840 0.35 +0.1
361,340 + ABZR87_RS17840 0.41 +0.0
361,358 + ABZR87_RS17840 0.43 -0.3
361,358 + ABZR87_RS17840 0.43 +0.7
361,358 + ABZR87_RS17840 0.43 -1.8
361,359 - ABZR87_RS17840 0.43 -0.3
361,374 + ABZR87_RS17840 0.44 -0.1
361,520 + ABZR87_RS17840 0.59 -0.4
361,521 - ABZR87_RS17840 0.59 -0.5
361,521 - ABZR87_RS17840 0.59 +0.2
361,821 - ABZR87_RS17840 0.89 +0.2
361,917 + +0.0
361,917 + +0.3
361,917 + -0.8
361,917 + +0.3
361,917 + -0.6
361,917 + -0.4
361,917 + +0.5
361,917 + -0.0
361,917 + +0.5
361,917 + -0.6
361,917 + +0.5
361,917 + -0.1
361,917 + -0.1
361,918 - -0.1
361,918 - -0.7
361,918 - -0.3
361,918 - +0.3
361,918 - -0.9
361,918 - +0.1
361,918 - +0.2
361,918 - -0.2
361,918 - +0.3
361,918 - -0.0
361,994 + +0.4
361,994 + -0.1
361,994 + -0.8
361,995 - -0.1
361,995 - -0.2
362,025 - -0.5
362,025 - -1.3
362,064 + -0.2
362,065 - +0.2
362,088 + +0.5
362,088 + +0.3
362,089 - +0.1
362,089 - +0.2
362,089 - +0.5
362,089 - -0.5
362,130 + -0.1
362,256 + ABZR87_RS17845 0.25 +0.3
362,326 - ABZR87_RS17845 0.35 -0.8
362,326 - ABZR87_RS17845 0.35 -0.7
362,472 + ABZR87_RS17845 0.56 -0.9
362,725 + +1.0
363,077 + ABZR87_RS17850 0.47 +0.2
363,077 + ABZR87_RS17850 0.47 +0.4
363,078 - ABZR87_RS17850 0.48 -1.5
363,078 - ABZR87_RS17850 0.48 -0.7
363,078 - ABZR87_RS17850 0.48 +0.9
363,220 + ABZR87_RS17850 0.70 -0.1
363,676 + ABZR87_RS17855 0.38 +0.0

Or see this region's nucleotide sequence