Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13750

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13745 and ABZR87_RS13750 are separated by 39 nucleotidesABZR87_RS13750 and ABZR87_RS13755 are separated by 30 nucleotides ABZR87_RS13745: ABZR87_RS13745 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 2,899,164 to 2,901,389 _RS13745 ABZR87_RS13750: ABZR87_RS13750 - RidA family protein, at 2,901,429 to 2,901,797 _RS13750 ABZR87_RS13755: ABZR87_RS13755 - alpha/beta hydrolase, at 2,901,828 to 2,902,697 _RS13755 Position (kb) 2901 2902Strain fitness (log2 ratio) -2 -1 0 1at 2900.443 kb on + strand, within ABZR87_RS13745at 2900.443 kb on + strand, within ABZR87_RS13745at 2900.443 kb on + strand, within ABZR87_RS13745at 2900.444 kb on - strand, within ABZR87_RS13745at 2900.444 kb on - strand, within ABZR87_RS13745at 2900.444 kb on - strand, within ABZR87_RS13745at 2900.470 kb on + strand, within ABZR87_RS13745at 2900.470 kb on + strand, within ABZR87_RS13745at 2900.470 kb on + strand, within ABZR87_RS13745at 2900.470 kb on + strand, within ABZR87_RS13745at 2900.471 kb on - strand, within ABZR87_RS13745at 2900.482 kb on + strand, within ABZR87_RS13745at 2900.530 kb on + strand, within ABZR87_RS13745at 2900.530 kb on + strand, within ABZR87_RS13745at 2900.530 kb on + strand, within ABZR87_RS13745at 2900.531 kb on - strand, within ABZR87_RS13745at 2900.578 kb on + strand, within ABZR87_RS13745at 2900.579 kb on - strand, within ABZR87_RS13745at 2900.629 kb on + strand, within ABZR87_RS13745at 2900.629 kb on + strand, within ABZR87_RS13745at 2900.629 kb on + strand, within ABZR87_RS13745at 2900.629 kb on + strand, within ABZR87_RS13745at 2900.630 kb on - strand, within ABZR87_RS13745at 2900.630 kb on - strand, within ABZR87_RS13745at 2900.630 kb on - strand, within ABZR87_RS13745at 2900.630 kb on - strand, within ABZR87_RS13745at 2900.767 kb on + strand, within ABZR87_RS13745at 2900.767 kb on + strand, within ABZR87_RS13745at 2900.767 kb on + strand, within ABZR87_RS13745at 2900.767 kb on + strand, within ABZR87_RS13745at 2900.771 kb on + strand, within ABZR87_RS13745at 2900.771 kb on + strand, within ABZR87_RS13745at 2900.771 kb on + strand, within ABZR87_RS13745at 2900.854 kb on + strand, within ABZR87_RS13745at 2900.854 kb on + strand, within ABZR87_RS13745at 2900.855 kb on - strand, within ABZR87_RS13745at 2900.855 kb on - strand, within ABZR87_RS13745at 2900.855 kb on - strand, within ABZR87_RS13745at 2900.855 kb on - strand, within ABZR87_RS13745at 2900.858 kb on + strand, within ABZR87_RS13745at 2900.858 kb on + strand, within ABZR87_RS13745at 2900.859 kb on - strand, within ABZR87_RS13745at 2900.859 kb on - strand, within ABZR87_RS13745at 2901.316 kb on + strandat 2901.317 kb on - strandat 2901.317 kb on - strandat 2901.469 kb on + strand, within ABZR87_RS13750at 2901.470 kb on - strand, within ABZR87_RS13750at 2901.724 kb on + strand, within ABZR87_RS13750at 2901.724 kb on + strand, within ABZR87_RS13750at 2901.739 kb on + strand, within ABZR87_RS13750at 2901.739 kb on + strand, within ABZR87_RS13750at 2901.739 kb on + strand, within ABZR87_RS13750at 2901.739 kb on + strand, within ABZR87_RS13750at 2901.740 kb on - strand, within ABZR87_RS13750at 2901.740 kb on - strand, within ABZR87_RS13750at 2901.758 kb on - strand, within ABZR87_RS13750at 2901.775 kb on + strandat 2901.775 kb on + strandat 2901.775 kb on + strandat 2901.775 kb on + strandat 2901.775 kb on + strandat 2901.776 kb on - strandat 2901.776 kb on - strandat 2902.102 kb on + strand, within ABZR87_RS13755at 2902.102 kb on + strand, within ABZR87_RS13755at 2902.103 kb on - strand, within ABZR87_RS13755at 2902.103 kb on - strand, within ABZR87_RS13755at 2902.208 kb on - strand, within ABZR87_RS13755at 2902.255 kb on + strand, within ABZR87_RS13755at 2902.255 kb on + strand, within ABZR87_RS13755at 2902.255 kb on + strand, within ABZR87_RS13755at 2902.255 kb on + strand, within ABZR87_RS13755at 2902.255 kb on + strand, within ABZR87_RS13755at 2902.255 kb on + strand, within ABZR87_RS13755at 2902.255 kb on + strand, within ABZR87_RS13755at 2902.256 kb on - strand, within ABZR87_RS13755at 2902.379 kb on + strand, within ABZR87_RS13755at 2902.441 kb on + strand, within ABZR87_RS13755at 2902.442 kb on - strand, within ABZR87_RS13755at 2902.456 kb on + strand, within ABZR87_RS13755at 2902.456 kb on + strand, within ABZR87_RS13755at 2902.456 kb on + strand, within ABZR87_RS13755at 2902.456 kb on + strand, within ABZR87_RS13755at 2902.457 kb on - strand, within ABZR87_RS13755at 2902.457 kb on - strand, within ABZR87_RS13755at 2902.457 kb on - strand, within ABZR87_RS13755at 2902.457 kb on - strand, within ABZR87_RS13755at 2902.522 kb on + strand, within ABZR87_RS13755at 2902.522 kb on + strand, within ABZR87_RS13755at 2902.523 kb on - strand, within ABZR87_RS13755at 2902.631 kb on - strandat 2902.708 kb on + strandat 2902.708 kb on + strandat 2902.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,900,443 + ABZR87_RS13745 0.57 -0.5
2,900,443 + ABZR87_RS13745 0.57 -1.1
2,900,443 + ABZR87_RS13745 0.57 -0.4
2,900,444 - ABZR87_RS13745 0.58 -1.4
2,900,444 - ABZR87_RS13745 0.58 -0.8
2,900,444 - ABZR87_RS13745 0.58 -0.9
2,900,470 + ABZR87_RS13745 0.59 -0.2
2,900,470 + ABZR87_RS13745 0.59 -0.8
2,900,470 + ABZR87_RS13745 0.59 +0.6
2,900,470 + ABZR87_RS13745 0.59 -0.3
2,900,471 - ABZR87_RS13745 0.59 -0.7
2,900,482 + ABZR87_RS13745 0.59 -1.9
2,900,530 + ABZR87_RS13745 0.61 -1.4
2,900,530 + ABZR87_RS13745 0.61 +0.5
2,900,530 + ABZR87_RS13745 0.61 -0.8
2,900,531 - ABZR87_RS13745 0.61 -1.1
2,900,578 + ABZR87_RS13745 0.64 -0.7
2,900,579 - ABZR87_RS13745 0.64 +0.4
2,900,629 + ABZR87_RS13745 0.66 -2.1
2,900,629 + ABZR87_RS13745 0.66 -0.1
2,900,629 + ABZR87_RS13745 0.66 -0.4
2,900,629 + ABZR87_RS13745 0.66 -0.7
2,900,630 - ABZR87_RS13745 0.66 -0.0
2,900,630 - ABZR87_RS13745 0.66 -1.0
2,900,630 - ABZR87_RS13745 0.66 +0.1
2,900,630 - ABZR87_RS13745 0.66 +0.2
2,900,767 + ABZR87_RS13745 0.72 +0.2
2,900,767 + ABZR87_RS13745 0.72 -0.1
2,900,767 + ABZR87_RS13745 0.72 -0.5
2,900,767 + ABZR87_RS13745 0.72 +0.2
2,900,771 + ABZR87_RS13745 0.72 +0.7
2,900,771 + ABZR87_RS13745 0.72 -0.7
2,900,771 + ABZR87_RS13745 0.72 +0.7
2,900,854 + ABZR87_RS13745 0.76 -0.6
2,900,854 + ABZR87_RS13745 0.76 -0.2
2,900,855 - ABZR87_RS13745 0.76 -0.6
2,900,855 - ABZR87_RS13745 0.76 -1.4
2,900,855 - ABZR87_RS13745 0.76 -0.3
2,900,855 - ABZR87_RS13745 0.76 -0.1
2,900,858 + ABZR87_RS13745 0.76 -0.5
2,900,858 + ABZR87_RS13745 0.76 -0.4
2,900,859 - ABZR87_RS13745 0.76 -0.8
2,900,859 - ABZR87_RS13745 0.76 +0.4
2,901,316 + -1.0
2,901,317 - -1.7
2,901,317 - -0.6
2,901,469 + ABZR87_RS13750 0.11 -0.7
2,901,470 - ABZR87_RS13750 0.11 -0.8
2,901,724 + ABZR87_RS13750 0.80 -0.6
2,901,724 + ABZR87_RS13750 0.80 -0.7
2,901,739 + ABZR87_RS13750 0.84 +1.5
2,901,739 + ABZR87_RS13750 0.84 -0.0
2,901,739 + ABZR87_RS13750 0.84 -1.3
2,901,739 + ABZR87_RS13750 0.84 -0.5
2,901,740 - ABZR87_RS13750 0.84 +0.3
2,901,740 - ABZR87_RS13750 0.84 -1.1
2,901,758 - ABZR87_RS13750 0.89 -1.9
2,901,775 + -0.1
2,901,775 + +0.7
2,901,775 + +0.7
2,901,775 + -0.3
2,901,775 + -0.7
2,901,776 - -0.0
2,901,776 - -1.0
2,902,102 + ABZR87_RS13755 0.31 -0.5
2,902,102 + ABZR87_RS13755 0.31 +1.0
2,902,103 - ABZR87_RS13755 0.32 -0.4
2,902,103 - ABZR87_RS13755 0.32 -0.3
2,902,208 - ABZR87_RS13755 0.44 +0.7
2,902,255 + ABZR87_RS13755 0.49 -0.1
2,902,255 + ABZR87_RS13755 0.49 +0.2
2,902,255 + ABZR87_RS13755 0.49 -0.7
2,902,255 + ABZR87_RS13755 0.49 -2.0
2,902,255 + ABZR87_RS13755 0.49 -0.5
2,902,255 + ABZR87_RS13755 0.49 +0.2
2,902,255 + ABZR87_RS13755 0.49 -0.6
2,902,256 - ABZR87_RS13755 0.49 -1.2
2,902,379 + ABZR87_RS13755 0.63 -0.7
2,902,441 + ABZR87_RS13755 0.70 -0.9
2,902,442 - ABZR87_RS13755 0.71 -0.2
2,902,456 + ABZR87_RS13755 0.72 -0.3
2,902,456 + ABZR87_RS13755 0.72 +0.0
2,902,456 + ABZR87_RS13755 0.72 -0.7
2,902,456 + ABZR87_RS13755 0.72 -1.1
2,902,457 - ABZR87_RS13755 0.72 -0.5
2,902,457 - ABZR87_RS13755 0.72 +0.1
2,902,457 - ABZR87_RS13755 0.72 -0.1
2,902,457 - ABZR87_RS13755 0.72 +0.8
2,902,522 + ABZR87_RS13755 0.80 -0.3
2,902,522 + ABZR87_RS13755 0.80 -0.2
2,902,523 - ABZR87_RS13755 0.80 -0.9
2,902,631 - -0.1
2,902,708 + +0.5
2,902,708 + -0.0
2,902,744 - +0.4

Or see this region's nucleotide sequence