Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13180 and ABZR87_RS13185 are separated by 42 nucleotides ABZR87_RS13185 and ABZR87_RS13190 are separated by 186 nucleotides
ABZR87_RS13180: ABZR87_RS13180 - efflux RND transporter permease subunit, at 2,789,833 to 2,792,952
_RS13180
ABZR87_RS13185: ABZR87_RS13185 - efflux RND transporter periplasmic adaptor subunit, at 2,792,995 to 2,794,203
_RS13185
ABZR87_RS13190: ABZR87_RS13190 - presqualene diphosphate synthase HpnD, at 2,794,390 to 2,795,223
_RS13190
Position (kb)
2792
2793
2794
2795 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2792.134 kb on + strand, within ABZR87_RS13180 at 2792.134 kb on + strand, within ABZR87_RS13180 at 2792.134 kb on + strand, within ABZR87_RS13180 at 2792.135 kb on - strand, within ABZR87_RS13180 at 2792.139 kb on - strand, within ABZR87_RS13180 at 2792.381 kb on + strand, within ABZR87_RS13180 at 2792.381 kb on + strand, within ABZR87_RS13180 at 2792.381 kb on + strand, within ABZR87_RS13180 at 2792.381 kb on + strand, within ABZR87_RS13180 at 2792.381 kb on + strand, within ABZR87_RS13180 at 2792.465 kb on + strand, within ABZR87_RS13180 at 2792.466 kb on - strand, within ABZR87_RS13180 at 2792.487 kb on + strand, within ABZR87_RS13180 at 2792.487 kb on + strand, within ABZR87_RS13180 at 2792.487 kb on + strand, within ABZR87_RS13180 at 2792.488 kb on - strand, within ABZR87_RS13180 at 2792.488 kb on - strand, within ABZR87_RS13180 at 2792.488 kb on - strand, within ABZR87_RS13180 at 2792.488 kb on - strand, within ABZR87_RS13180 at 2792.488 kb on - strand, within ABZR87_RS13180 at 2792.488 kb on - strand, within ABZR87_RS13180 at 2792.488 kb on - strand, within ABZR87_RS13180 at 2792.510 kb on + strand, within ABZR87_RS13180 at 2792.511 kb on - strand, within ABZR87_RS13180 at 2792.511 kb on - strand, within ABZR87_RS13180 at 2792.522 kb on + strand, within ABZR87_RS13180 at 2792.523 kb on - strand, within ABZR87_RS13180 at 2792.523 kb on - strand, within ABZR87_RS13180 at 2792.549 kb on + strand, within ABZR87_RS13180 at 2792.612 kb on + strand, within ABZR87_RS13180 at 2792.612 kb on + strand, within ABZR87_RS13180 at 2792.613 kb on - strand, within ABZR87_RS13180 at 2792.690 kb on + strand at 2792.690 kb on + strand at 2792.691 kb on - strand at 2792.711 kb on + strand at 2792.711 kb on + strand at 2792.853 kb on - strand at 2792.853 kb on - strand at 2793.141 kb on + strand, within ABZR87_RS13185 at 2793.141 kb on + strand, within ABZR87_RS13185 at 2793.201 kb on - strand, within ABZR87_RS13185 at 2793.235 kb on + strand, within ABZR87_RS13185 at 2793.257 kb on - strand, within ABZR87_RS13185 at 2793.274 kb on - strand, within ABZR87_RS13185 at 2793.368 kb on + strand, within ABZR87_RS13185 at 2793.369 kb on - strand, within ABZR87_RS13185 at 2793.369 kb on - strand, within ABZR87_RS13185 at 2793.480 kb on + strand, within ABZR87_RS13185 at 2793.629 kb on + strand, within ABZR87_RS13185 at 2793.629 kb on + strand, within ABZR87_RS13185 at 2793.678 kb on - strand, within ABZR87_RS13185 at 2793.698 kb on + strand, within ABZR87_RS13185 at 2793.698 kb on + strand, within ABZR87_RS13185 at 2793.698 kb on + strand, within ABZR87_RS13185 at 2793.698 kb on + strand, within ABZR87_RS13185 at 2793.698 kb on + strand, within ABZR87_RS13185 at 2793.699 kb on - strand, within ABZR87_RS13185 at 2793.699 kb on - strand, within ABZR87_RS13185 at 2793.699 kb on - strand, within ABZR87_RS13185 at 2793.761 kb on + strand, within ABZR87_RS13185 at 2794.182 kb on - strand at 2794.217 kb on + strand at 2794.218 kb on - strand at 2794.237 kb on - strand at 2794.237 kb on - strand at 2794.239 kb on + strand at 2794.239 kb on + strand at 2794.240 kb on - strand at 2794.241 kb on + strand at 2794.242 kb on - strand at 2794.318 kb on + strand at 2794.319 kb on - strand at 2794.346 kb on - strand at 2794.346 kb on - strand at 2794.363 kb on + strand at 2794.364 kb on - strand at 2794.405 kb on + strand at 2794.406 kb on - strand at 2794.444 kb on + strand at 2794.444 kb on + strand at 2794.444 kb on + strand at 2794.444 kb on + strand at 2794.444 kb on + strand at 2794.445 kb on - strand at 2794.447 kb on + strand at 2794.448 kb on - strand at 2794.448 kb on - strand at 2794.448 kb on - strand at 2794.448 kb on - strand at 2794.448 kb on - strand at 2794.454 kb on + strand at 2794.455 kb on - strand at 2794.455 kb on - strand at 2794.455 kb on - strand at 2794.726 kb on + strand, within ABZR87_RS13190 at 2794.766 kb on + strand, within ABZR87_RS13190 at 2794.912 kb on + strand, within ABZR87_RS13190 at 2794.912 kb on + strand, within ABZR87_RS13190 at 2794.912 kb on + strand, within ABZR87_RS13190 at 2794.913 kb on - strand, within ABZR87_RS13190 at 2794.913 kb on - strand, within ABZR87_RS13190 at 2794.913 kb on - strand, within ABZR87_RS13190 at 2794.913 kb on - strand, within ABZR87_RS13190 at 2794.913 kb on - strand, within ABZR87_RS13190 at 2794.913 kb on - strand, within ABZR87_RS13190 at 2795.032 kb on + strand, within ABZR87_RS13190 at 2795.032 kb on + strand, within ABZR87_RS13190 at 2795.032 kb on + strand, within ABZR87_RS13190 at 2795.033 kb on - strand, within ABZR87_RS13190 at 2795.033 kb on - strand, within ABZR87_RS13190 at 2795.033 kb on - strand, within ABZR87_RS13190
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,792,134 + ABZR87_RS13180 0.74 -0.7 2,792,134 + ABZR87_RS13180 0.74 +0.1 2,792,134 + ABZR87_RS13180 0.74 +0.4 2,792,135 - ABZR87_RS13180 0.74 +0.1 2,792,139 - ABZR87_RS13180 0.74 +2.2 2,792,381 + ABZR87_RS13180 0.82 -0.1 2,792,381 + ABZR87_RS13180 0.82 +0.0 2,792,381 + ABZR87_RS13180 0.82 -0.5 2,792,381 + ABZR87_RS13180 0.82 -0.1 2,792,381 + ABZR87_RS13180 0.82 -0.7 2,792,465 + ABZR87_RS13180 0.84 -0.1 2,792,466 - ABZR87_RS13180 0.84 +0.1 2,792,487 + ABZR87_RS13180 0.85 -0.2 2,792,487 + ABZR87_RS13180 0.85 -0.4 2,792,487 + ABZR87_RS13180 0.85 -1.1 2,792,488 - ABZR87_RS13180 0.85 -0.5 2,792,488 - ABZR87_RS13180 0.85 +0.5 2,792,488 - ABZR87_RS13180 0.85 +0.1 2,792,488 - ABZR87_RS13180 0.85 -0.2 2,792,488 - ABZR87_RS13180 0.85 -0.1 2,792,488 - ABZR87_RS13180 0.85 +0.4 2,792,488 - ABZR87_RS13180 0.85 +0.3 2,792,510 + ABZR87_RS13180 0.86 +0.6 2,792,511 - ABZR87_RS13180 0.86 +0.0 2,792,511 - ABZR87_RS13180 0.86 -0.6 2,792,522 + ABZR87_RS13180 0.86 +0.8 2,792,523 - ABZR87_RS13180 0.86 -0.1 2,792,523 - ABZR87_RS13180 0.86 -0.2 2,792,549 + ABZR87_RS13180 0.87 +0.4 2,792,612 + ABZR87_RS13180 0.89 -0.4 2,792,612 + ABZR87_RS13180 0.89 +0.2 2,792,613 - ABZR87_RS13180 0.89 +1.3 2,792,690 + -0.0 2,792,690 + +0.3 2,792,691 - +0.4 2,792,711 + -0.3 2,792,711 + +0.9 2,792,853 - -0.9 2,792,853 - -0.4 2,793,141 + ABZR87_RS13185 0.12 -0.1 2,793,141 + ABZR87_RS13185 0.12 -0.1 2,793,201 - ABZR87_RS13185 0.17 +0.4 2,793,235 + ABZR87_RS13185 0.20 -2.4 2,793,257 - ABZR87_RS13185 0.22 +0.5 2,793,274 - ABZR87_RS13185 0.23 -1.0 2,793,368 + ABZR87_RS13185 0.31 +0.5 2,793,369 - ABZR87_RS13185 0.31 +0.4 2,793,369 - ABZR87_RS13185 0.31 -0.0 2,793,480 + ABZR87_RS13185 0.40 +0.2 2,793,629 + ABZR87_RS13185 0.52 +0.0 2,793,629 + ABZR87_RS13185 0.52 -0.0 2,793,678 - ABZR87_RS13185 0.56 -1.3 2,793,698 + ABZR87_RS13185 0.58 +0.3 2,793,698 + ABZR87_RS13185 0.58 -0.0 2,793,698 + ABZR87_RS13185 0.58 +0.5 2,793,698 + ABZR87_RS13185 0.58 +0.2 2,793,698 + ABZR87_RS13185 0.58 -0.0 2,793,699 - ABZR87_RS13185 0.58 -0.9 2,793,699 - ABZR87_RS13185 0.58 -0.3 2,793,699 - ABZR87_RS13185 0.58 -1.1 2,793,761 + ABZR87_RS13185 0.63 -0.3 2,794,182 - +0.1 2,794,217 + +0.6 2,794,218 - +0.1 2,794,237 - -0.0 2,794,237 - +0.1 2,794,239 + -0.1 2,794,239 + -0.5 2,794,240 - -0.1 2,794,241 + -0.3 2,794,242 - +0.0 2,794,318 + -1.6 2,794,319 - -1.4 2,794,346 - +0.4 2,794,346 - +0.1 2,794,363 + +0.7 2,794,364 - -0.7 2,794,405 + +0.6 2,794,406 - -0.0 2,794,444 + +0.3 2,794,444 + +0.3 2,794,444 + +0.3 2,794,444 + -2.8 2,794,444 + +0.0 2,794,445 - -0.2 2,794,447 + -0.5 2,794,448 - -0.2 2,794,448 - -0.2 2,794,448 - +1.2 2,794,448 - +0.2 2,794,448 - -1.0 2,794,454 + -2.2 2,794,455 - -0.2 2,794,455 - -0.1 2,794,455 - +0.2 2,794,726 + ABZR87_RS13190 0.40 -0.0 2,794,766 + ABZR87_RS13190 0.45 +0.3 2,794,912 + ABZR87_RS13190 0.63 +0.4 2,794,912 + ABZR87_RS13190 0.63 +0.1 2,794,912 + ABZR87_RS13190 0.63 +0.5 2,794,913 - ABZR87_RS13190 0.63 +0.6 2,794,913 - ABZR87_RS13190 0.63 -0.6 2,794,913 - ABZR87_RS13190 0.63 +0.2 2,794,913 - ABZR87_RS13190 0.63 +0.2 2,794,913 - ABZR87_RS13190 0.63 +0.3 2,794,913 - ABZR87_RS13190 0.63 +0.6 2,795,032 + ABZR87_RS13190 0.77 +0.6 2,795,032 + ABZR87_RS13190 0.77 +0.2 2,795,032 + ABZR87_RS13190 0.77 -0.3 2,795,033 - ABZR87_RS13190 0.77 +0.0 2,795,033 - ABZR87_RS13190 0.77 +0.8 2,795,033 - ABZR87_RS13190 0.77 -1.4
Or see this region's nucleotide sequence