Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11770

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11760 and ABZR87_RS11765 are separated by 60 nucleotidesABZR87_RS11765 and ABZR87_RS11770 are separated by 45 nucleotidesABZR87_RS11770 and ABZR87_RS11775 are separated by 141 nucleotides ABZR87_RS11760: ABZR87_RS11760 - membrane protein, at 2,492,227 to 2,492,640 _RS11760 ABZR87_RS11765: ABZR87_RS11765 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,492,701 to 2,493,528 _RS11765 ABZR87_RS11770: ABZR87_RS11770 - succinyldiaminopimelate transaminase, at 2,493,574 to 2,494,773 _RS11770 ABZR87_RS11775: ABZR87_RS11775 - DMT family transporter, at 2,494,915 to 2,495,835 _RS11775 Position (kb) 2493 2494 2495Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2492.676 kb on + strandat 2492.676 kb on + strandat 2492.703 kb on - strandat 2493.657 kb on - strandat 2493.698 kb on + strand, within ABZR87_RS11770at 2493.699 kb on - strand, within ABZR87_RS11770at 2493.699 kb on - strand, within ABZR87_RS11770at 2493.794 kb on + strand, within ABZR87_RS11770at 2493.794 kb on + strand, within ABZR87_RS11770at 2493.794 kb on + strand, within ABZR87_RS11770at 2493.795 kb on - strand, within ABZR87_RS11770at 2493.795 kb on - strand, within ABZR87_RS11770at 2493.795 kb on - strand, within ABZR87_RS11770at 2493.795 kb on - strand, within ABZR87_RS11770at 2493.795 kb on - strand, within ABZR87_RS11770at 2493.795 kb on - strand, within ABZR87_RS11770at 2493.795 kb on - strand, within ABZR87_RS11770at 2493.795 kb on - strand, within ABZR87_RS11770at 2493.959 kb on + strand, within ABZR87_RS11770at 2493.960 kb on - strand, within ABZR87_RS11770at 2493.960 kb on - strand, within ABZR87_RS11770at 2493.968 kb on + strand, within ABZR87_RS11770at 2493.969 kb on - strand, within ABZR87_RS11770at 2493.969 kb on - strand, within ABZR87_RS11770at 2493.977 kb on + strand, within ABZR87_RS11770at 2493.977 kb on + strand, within ABZR87_RS11770at 2493.977 kb on + strand, within ABZR87_RS11770at 2494.151 kb on + strand, within ABZR87_RS11770at 2494.151 kb on + strand, within ABZR87_RS11770at 2494.152 kb on - strand, within ABZR87_RS11770at 2494.152 kb on - strand, within ABZR87_RS11770at 2494.258 kb on + strand, within ABZR87_RS11770at 2494.258 kb on + strand, within ABZR87_RS11770at 2494.258 kb on + strand, within ABZR87_RS11770at 2494.258 kb on + strand, within ABZR87_RS11770at 2494.259 kb on - strand, within ABZR87_RS11770at 2494.259 kb on - strand, within ABZR87_RS11770at 2494.259 kb on - strand, within ABZR87_RS11770at 2494.319 kb on + strand, within ABZR87_RS11770at 2494.319 kb on + strand, within ABZR87_RS11770at 2494.319 kb on + strand, within ABZR87_RS11770at 2494.320 kb on - strand, within ABZR87_RS11770at 2494.320 kb on - strand, within ABZR87_RS11770at 2494.320 kb on - strand, within ABZR87_RS11770at 2494.320 kb on - strand, within ABZR87_RS11770at 2494.385 kb on + strand, within ABZR87_RS11770at 2494.386 kb on - strand, within ABZR87_RS11770at 2494.386 kb on - strand, within ABZR87_RS11770at 2494.386 kb on - strand, within ABZR87_RS11770at 2494.395 kb on - strand, within ABZR87_RS11770at 2494.395 kb on - strand, within ABZR87_RS11770at 2494.530 kb on - strand, within ABZR87_RS11770at 2494.592 kb on + strand, within ABZR87_RS11770at 2494.839 kb on + strandat 2494.926 kb on - strandat 2494.926 kb on - strandat 2494.988 kb on + strandat 2494.988 kb on + strandat 2494.989 kb on - strandat 2495.027 kb on - strand, within ABZR87_RS11775at 2495.245 kb on + strand, within ABZR87_RS11775at 2495.245 kb on + strand, within ABZR87_RS11775at 2495.245 kb on + strand, within ABZR87_RS11775at 2495.245 kb on + strand, within ABZR87_RS11775at 2495.246 kb on - strand, within ABZR87_RS11775at 2495.246 kb on - strand, within ABZR87_RS11775at 2495.246 kb on - strand, within ABZR87_RS11775at 2495.246 kb on - strand, within ABZR87_RS11775at 2495.598 kb on + strand, within ABZR87_RS11775at 2495.598 kb on + strand, within ABZR87_RS11775at 2495.598 kb on + strand, within ABZR87_RS11775at 2495.599 kb on - strand, within ABZR87_RS11775at 2495.599 kb on - strand, within ABZR87_RS11775at 2495.599 kb on - strand, within ABZR87_RS11775

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,492,676 + +0.7
2,492,676 + -0.5
2,492,703 - -0.2
2,493,657 - -0.4
2,493,698 + ABZR87_RS11770 0.10 -2.3
2,493,699 - ABZR87_RS11770 0.10 +1.9
2,493,699 - ABZR87_RS11770 0.10 +0.2
2,493,794 + ABZR87_RS11770 0.18 -1.1
2,493,794 + ABZR87_RS11770 0.18 -2.0
2,493,794 + ABZR87_RS11770 0.18 -1.3
2,493,795 - ABZR87_RS11770 0.18 +0.6
2,493,795 - ABZR87_RS11770 0.18 -1.0
2,493,795 - ABZR87_RS11770 0.18 +0.2
2,493,795 - ABZR87_RS11770 0.18 -0.1
2,493,795 - ABZR87_RS11770 0.18 -0.1
2,493,795 - ABZR87_RS11770 0.18 -0.0
2,493,795 - ABZR87_RS11770 0.18 -0.2
2,493,795 - ABZR87_RS11770 0.18 +0.4
2,493,959 + ABZR87_RS11770 0.32 -3.6
2,493,960 - ABZR87_RS11770 0.32 +0.5
2,493,960 - ABZR87_RS11770 0.32 -0.1
2,493,968 + ABZR87_RS11770 0.33 -3.0
2,493,969 - ABZR87_RS11770 0.33 -0.4
2,493,969 - ABZR87_RS11770 0.33 -0.5
2,493,977 + ABZR87_RS11770 0.34 -3.6
2,493,977 + ABZR87_RS11770 0.34 -2.4
2,493,977 + ABZR87_RS11770 0.34 -3.7
2,494,151 + ABZR87_RS11770 0.48 -3.0
2,494,151 + ABZR87_RS11770 0.48 -2.8
2,494,152 - ABZR87_RS11770 0.48 -0.1
2,494,152 - ABZR87_RS11770 0.48 -2.4
2,494,258 + ABZR87_RS11770 0.57 -3.2
2,494,258 + ABZR87_RS11770 0.57 -2.3
2,494,258 + ABZR87_RS11770 0.57 -2.9
2,494,258 + ABZR87_RS11770 0.57 -3.0
2,494,259 - ABZR87_RS11770 0.57 -0.5
2,494,259 - ABZR87_RS11770 0.57 -0.3
2,494,259 - ABZR87_RS11770 0.57 -0.2
2,494,319 + ABZR87_RS11770 0.62 -4.6
2,494,319 + ABZR87_RS11770 0.62 -2.2
2,494,319 + ABZR87_RS11770 0.62 -3.3
2,494,320 - ABZR87_RS11770 0.62 -0.0
2,494,320 - ABZR87_RS11770 0.62 -1.7
2,494,320 - ABZR87_RS11770 0.62 -0.8
2,494,320 - ABZR87_RS11770 0.62 -0.3
2,494,385 + ABZR87_RS11770 0.68 -1.7
2,494,386 - ABZR87_RS11770 0.68 -0.3
2,494,386 - ABZR87_RS11770 0.68 -0.7
2,494,386 - ABZR87_RS11770 0.68 -0.5
2,494,395 - ABZR87_RS11770 0.68 -0.0
2,494,395 - ABZR87_RS11770 0.68 -0.3
2,494,530 - ABZR87_RS11770 0.80 -0.2
2,494,592 + ABZR87_RS11770 0.85 -3.2
2,494,839 + -2.8
2,494,926 - -2.1
2,494,926 - +0.3
2,494,988 + -0.0
2,494,988 + +0.3
2,494,989 - -0.3
2,495,027 - ABZR87_RS11775 0.12 +0.3
2,495,245 + ABZR87_RS11775 0.36 +0.2
2,495,245 + ABZR87_RS11775 0.36 -0.6
2,495,245 + ABZR87_RS11775 0.36 -0.3
2,495,245 + ABZR87_RS11775 0.36 -0.0
2,495,246 - ABZR87_RS11775 0.36 +0.6
2,495,246 - ABZR87_RS11775 0.36 -0.0
2,495,246 - ABZR87_RS11775 0.36 +0.0
2,495,246 - ABZR87_RS11775 0.36 +0.7
2,495,598 + ABZR87_RS11775 0.74 -0.0
2,495,598 + ABZR87_RS11775 0.74 -0.7
2,495,598 + ABZR87_RS11775 0.74 -0.7
2,495,599 - ABZR87_RS11775 0.74 -0.8
2,495,599 - ABZR87_RS11775 0.74 +1.0
2,495,599 - ABZR87_RS11775 0.74 +0.0

Or see this region's nucleotide sequence