Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09950

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09945 and ABZR87_RS09950 are separated by 2 nucleotidesABZR87_RS09950 and ABZR87_RS09955 are separated by 37 nucleotides ABZR87_RS09945: ABZR87_RS09945 - recombinase, at 2,112,984 to 2,115,068 _RS09945 ABZR87_RS09950: ABZR87_RS09950 - ribokinase, at 2,115,071 to 2,116,036 _RS09950 ABZR87_RS09955: ABZR87_RS09955 - LacI family DNA-binding transcriptional regulator, at 2,116,074 to 2,117,114 _RS09955 Position (kb) 2115 2116 2117Strain fitness (log2 ratio) -2 -1 0 1at 2114.121 kb on + strand, within ABZR87_RS09945at 2114.122 kb on - strand, within ABZR87_RS09945at 2114.122 kb on - strand, within ABZR87_RS09945at 2114.122 kb on - strand, within ABZR87_RS09945at 2114.122 kb on - strand, within ABZR87_RS09945at 2114.162 kb on + strand, within ABZR87_RS09945at 2114.190 kb on + strand, within ABZR87_RS09945at 2114.190 kb on + strand, within ABZR87_RS09945at 2114.190 kb on + strand, within ABZR87_RS09945at 2114.191 kb on - strand, within ABZR87_RS09945at 2114.191 kb on - strand, within ABZR87_RS09945at 2114.191 kb on - strand, within ABZR87_RS09945at 2114.191 kb on - strand, within ABZR87_RS09945at 2114.505 kb on + strand, within ABZR87_RS09945at 2114.505 kb on + strand, within ABZR87_RS09945at 2114.579 kb on - strand, within ABZR87_RS09945at 2114.604 kb on + strand, within ABZR87_RS09945at 2114.605 kb on - strand, within ABZR87_RS09945at 2114.756 kb on + strand, within ABZR87_RS09945at 2114.756 kb on + strand, within ABZR87_RS09945at 2114.756 kb on + strand, within ABZR87_RS09945at 2114.757 kb on - strand, within ABZR87_RS09945at 2114.757 kb on - strand, within ABZR87_RS09945at 2114.757 kb on - strand, within ABZR87_RS09945at 2114.757 kb on - strand, within ABZR87_RS09945at 2114.834 kb on + strand, within ABZR87_RS09945at 2114.957 kb on + strandat 2115.066 kb on + strandat 2115.067 kb on - strandat 2115.067 kb on - strandat 2115.072 kb on + strandat 2115.073 kb on - strandat 2115.073 kb on - strandat 2115.187 kb on + strand, within ABZR87_RS09950at 2115.238 kb on + strand, within ABZR87_RS09950at 2115.238 kb on + strand, within ABZR87_RS09950at 2115.308 kb on + strand, within ABZR87_RS09950at 2115.308 kb on + strand, within ABZR87_RS09950at 2115.308 kb on + strand, within ABZR87_RS09950at 2115.308 kb on + strand, within ABZR87_RS09950at 2115.308 kb on + strand, within ABZR87_RS09950at 2115.309 kb on - strand, within ABZR87_RS09950at 2115.309 kb on - strand, within ABZR87_RS09950at 2115.309 kb on - strand, within ABZR87_RS09950at 2115.312 kb on + strand, within ABZR87_RS09950at 2115.313 kb on - strand, within ABZR87_RS09950at 2115.313 kb on - strand, within ABZR87_RS09950at 2115.456 kb on + strand, within ABZR87_RS09950at 2115.456 kb on + strand, within ABZR87_RS09950at 2115.457 kb on - strand, within ABZR87_RS09950at 2115.647 kb on + strand, within ABZR87_RS09950at 2115.648 kb on - strand, within ABZR87_RS09950at 2115.802 kb on - strand, within ABZR87_RS09950at 2115.802 kb on - strand, within ABZR87_RS09950at 2115.964 kb on + strandat 2116.046 kb on - strandat 2116.046 kb on - strandat 2116.046 kb on - strandat 2116.270 kb on + strand, within ABZR87_RS09955at 2116.270 kb on + strand, within ABZR87_RS09955at 2116.276 kb on + strand, within ABZR87_RS09955at 2116.276 kb on + strand, within ABZR87_RS09955at 2116.276 kb on + strand, within ABZR87_RS09955at 2116.277 kb on - strand, within ABZR87_RS09955at 2116.621 kb on + strand, within ABZR87_RS09955at 2116.621 kb on + strand, within ABZR87_RS09955at 2116.622 kb on - strand, within ABZR87_RS09955at 2116.622 kb on - strand, within ABZR87_RS09955at 2116.623 kb on - strand, within ABZR87_RS09955at 2116.847 kb on - strand, within ABZR87_RS09955at 2116.875 kb on - strand, within ABZR87_RS09955at 2116.952 kb on + strand, within ABZR87_RS09955at 2116.981 kb on + strand, within ABZR87_RS09955at 2116.981 kb on + strand, within ABZR87_RS09955at 2116.981 kb on + strand, within ABZR87_RS09955at 2116.982 kb on - strand, within ABZR87_RS09955

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,114,121 + ABZR87_RS09945 0.55 -0.7
2,114,122 - ABZR87_RS09945 0.55 +0.1
2,114,122 - ABZR87_RS09945 0.55 -1.2
2,114,122 - ABZR87_RS09945 0.55 +0.4
2,114,122 - ABZR87_RS09945 0.55 -0.6
2,114,162 + ABZR87_RS09945 0.56 -0.7
2,114,190 + ABZR87_RS09945 0.58 +0.1
2,114,190 + ABZR87_RS09945 0.58 +0.7
2,114,190 + ABZR87_RS09945 0.58 -0.3
2,114,191 - ABZR87_RS09945 0.58 -0.5
2,114,191 - ABZR87_RS09945 0.58 +0.1
2,114,191 - ABZR87_RS09945 0.58 -0.3
2,114,191 - ABZR87_RS09945 0.58 -0.0
2,114,505 + ABZR87_RS09945 0.73 +0.1
2,114,505 + ABZR87_RS09945 0.73 -0.4
2,114,579 - ABZR87_RS09945 0.76 -0.3
2,114,604 + ABZR87_RS09945 0.78 -0.2
2,114,605 - ABZR87_RS09945 0.78 -0.4
2,114,756 + ABZR87_RS09945 0.85 -0.7
2,114,756 + ABZR87_RS09945 0.85 +0.2
2,114,756 + ABZR87_RS09945 0.85 +0.7
2,114,757 - ABZR87_RS09945 0.85 -0.5
2,114,757 - ABZR87_RS09945 0.85 -0.7
2,114,757 - ABZR87_RS09945 0.85 +0.1
2,114,757 - ABZR87_RS09945 0.85 -0.9
2,114,834 + ABZR87_RS09945 0.89 -0.2
2,114,957 + -0.9
2,115,066 + -0.6
2,115,067 - +0.1
2,115,067 - -0.1
2,115,072 + +0.2
2,115,073 - -0.2
2,115,073 - +0.3
2,115,187 + ABZR87_RS09950 0.12 -0.1
2,115,238 + ABZR87_RS09950 0.17 +0.1
2,115,238 + ABZR87_RS09950 0.17 -0.4
2,115,308 + ABZR87_RS09950 0.25 -0.0
2,115,308 + ABZR87_RS09950 0.25 +0.1
2,115,308 + ABZR87_RS09950 0.25 -0.6
2,115,308 + ABZR87_RS09950 0.25 +0.1
2,115,308 + ABZR87_RS09950 0.25 +0.4
2,115,309 - ABZR87_RS09950 0.25 +0.5
2,115,309 - ABZR87_RS09950 0.25 -0.3
2,115,309 - ABZR87_RS09950 0.25 +0.2
2,115,312 + ABZR87_RS09950 0.25 +0.1
2,115,313 - ABZR87_RS09950 0.25 -1.5
2,115,313 - ABZR87_RS09950 0.25 +0.4
2,115,456 + ABZR87_RS09950 0.40 -0.2
2,115,456 + ABZR87_RS09950 0.40 -0.0
2,115,457 - ABZR87_RS09950 0.40 -0.4
2,115,647 + ABZR87_RS09950 0.60 -0.3
2,115,648 - ABZR87_RS09950 0.60 -0.3
2,115,802 - ABZR87_RS09950 0.76 -1.1
2,115,802 - ABZR87_RS09950 0.76 +0.0
2,115,964 + +0.6
2,116,046 - +0.4
2,116,046 - -0.1
2,116,046 - +0.7
2,116,270 + ABZR87_RS09955 0.19 -0.7
2,116,270 + ABZR87_RS09955 0.19 -0.4
2,116,276 + ABZR87_RS09955 0.19 -1.4
2,116,276 + ABZR87_RS09955 0.19 -0.1
2,116,276 + ABZR87_RS09955 0.19 -0.6
2,116,277 - ABZR87_RS09955 0.20 -0.1
2,116,621 + ABZR87_RS09955 0.53 +0.2
2,116,621 + ABZR87_RS09955 0.53 +1.0
2,116,622 - ABZR87_RS09955 0.53 +0.3
2,116,622 - ABZR87_RS09955 0.53 -0.4
2,116,623 - ABZR87_RS09955 0.53 -0.7
2,116,847 - ABZR87_RS09955 0.74 -1.1
2,116,875 - ABZR87_RS09955 0.77 -1.7
2,116,952 + ABZR87_RS09955 0.84 -0.9
2,116,981 + ABZR87_RS09955 0.87 -2.6
2,116,981 + ABZR87_RS09955 0.87 -0.5
2,116,981 + ABZR87_RS09955 0.87 -0.7
2,116,982 - ABZR87_RS09955 0.87 +0.2

Or see this region's nucleotide sequence