Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06900

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06890 and ABZR87_RS06895 are separated by 18 nucleotidesABZR87_RS06895 and ABZR87_RS06900 are separated by 55 nucleotidesABZR87_RS06900 and ABZR87_RS06905 are separated by 219 nucleotidesABZR87_RS06905 and ABZR87_RS06910 are separated by 88 nucleotides ABZR87_RS06890: ABZR87_RS06890 - ABC transporter ATP-binding protein, at 1,459,172 to 1,459,975 _RS06890 ABZR87_RS06895: ABZR87_RS06895 - nitrate ABC transporter permease, at 1,459,994 to 1,460,845 _RS06895 ABZR87_RS06900: ABZR87_RS06900 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,460,901 to 1,462,181 _RS06900 ABZR87_RS06905: ABZR87_RS06905 - hypothetical protein, at 1,462,401 to 1,462,664 _RS06905 ABZR87_RS06910: ABZR87_RS06910 - ANTAR domain-containing protein, at 1,462,753 to 1,463,379 _RS06910 Position (kb) 1460 1461 1462 1463Strain fitness (log2 ratio) -1 0 1 2at 1460.007 kb on + strandat 1460.008 kb on - strandat 1460.220 kb on + strand, within ABZR87_RS06895at 1460.220 kb on + strand, within ABZR87_RS06895at 1460.220 kb on + strand, within ABZR87_RS06895at 1460.221 kb on - strand, within ABZR87_RS06895at 1460.221 kb on - strand, within ABZR87_RS06895at 1460.221 kb on - strand, within ABZR87_RS06895at 1460.243 kb on + strand, within ABZR87_RS06895at 1460.244 kb on - strand, within ABZR87_RS06895at 1460.244 kb on - strand, within ABZR87_RS06895at 1460.298 kb on + strand, within ABZR87_RS06895at 1460.298 kb on + strand, within ABZR87_RS06895at 1460.298 kb on + strand, within ABZR87_RS06895at 1460.613 kb on + strand, within ABZR87_RS06895at 1460.613 kb on + strand, within ABZR87_RS06895at 1460.929 kb on + strandat 1460.930 kb on - strandat 1460.930 kb on - strandat 1461.073 kb on + strand, within ABZR87_RS06900at 1461.074 kb on - strand, within ABZR87_RS06900at 1461.142 kb on + strand, within ABZR87_RS06900at 1461.169 kb on + strand, within ABZR87_RS06900at 1461.170 kb on - strand, within ABZR87_RS06900at 1461.170 kb on - strand, within ABZR87_RS06900at 1461.170 kb on - strand, within ABZR87_RS06900at 1461.170 kb on - strand, within ABZR87_RS06900at 1461.170 kb on - strand, within ABZR87_RS06900at 1461.170 kb on - strand, within ABZR87_RS06900at 1461.221 kb on - strand, within ABZR87_RS06900at 1461.268 kb on + strand, within ABZR87_RS06900at 1461.269 kb on - strand, within ABZR87_RS06900at 1461.269 kb on - strand, within ABZR87_RS06900at 1461.380 kb on - strand, within ABZR87_RS06900at 1461.511 kb on + strand, within ABZR87_RS06900at 1461.511 kb on + strand, within ABZR87_RS06900at 1461.511 kb on + strand, within ABZR87_RS06900at 1461.512 kb on - strand, within ABZR87_RS06900at 1461.616 kb on + strand, within ABZR87_RS06900at 1461.616 kb on + strand, within ABZR87_RS06900at 1461.617 kb on - strand, within ABZR87_RS06900at 1461.617 kb on - strand, within ABZR87_RS06900at 1461.617 kb on - strand, within ABZR87_RS06900at 1461.620 kb on - strand, within ABZR87_RS06900at 1461.620 kb on - strand, within ABZR87_RS06900at 1461.667 kb on + strand, within ABZR87_RS06900at 1461.667 kb on + strand, within ABZR87_RS06900at 1461.667 kb on + strand, within ABZR87_RS06900at 1461.668 kb on - strand, within ABZR87_RS06900at 1461.668 kb on - strand, within ABZR87_RS06900at 1461.668 kb on - strand, within ABZR87_RS06900at 1461.668 kb on - strand, within ABZR87_RS06900at 1461.829 kb on + strand, within ABZR87_RS06900at 1461.829 kb on + strand, within ABZR87_RS06900at 1461.829 kb on + strand, within ABZR87_RS06900at 1461.829 kb on + strand, within ABZR87_RS06900at 1461.830 kb on - strand, within ABZR87_RS06900at 1461.830 kb on - strand, within ABZR87_RS06900at 1461.830 kb on - strand, within ABZR87_RS06900at 1461.830 kb on - strand, within ABZR87_RS06900at 1461.841 kb on + strand, within ABZR87_RS06900at 1461.841 kb on + strand, within ABZR87_RS06900at 1461.934 kb on + strand, within ABZR87_RS06900at 1461.934 kb on + strand, within ABZR87_RS06900at 1461.934 kb on + strand, within ABZR87_RS06900at 1461.934 kb on + strand, within ABZR87_RS06900at 1462.321 kb on + strandat 1462.322 kb on - strandat 1462.425 kb on + strandat 1462.425 kb on + strandat 1462.425 kb on + strandat 1462.426 kb on - strandat 1462.509 kb on + strand, within ABZR87_RS06905at 1462.510 kb on - strand, within ABZR87_RS06905at 1462.552 kb on - strand, within ABZR87_RS06905at 1462.552 kb on - strand, within ABZR87_RS06905at 1462.552 kb on - strand, within ABZR87_RS06905at 1462.552 kb on - strand, within ABZR87_RS06905at 1462.635 kb on + strand, within ABZR87_RS06905at 1462.636 kb on - strand, within ABZR87_RS06905at 1462.636 kb on - strand, within ABZR87_RS06905at 1462.636 kb on - strand, within ABZR87_RS06905at 1462.636 kb on - strand, within ABZR87_RS06905at 1462.974 kb on - strand, within ABZR87_RS06910at 1462.974 kb on - strand, within ABZR87_RS06910at 1462.974 kb on - strand, within ABZR87_RS06910at 1462.974 kb on - strand, within ABZR87_RS06910at 1463.027 kb on + strand, within ABZR87_RS06910at 1463.027 kb on + strand, within ABZR87_RS06910at 1463.027 kb on + strand, within ABZR87_RS06910at 1463.028 kb on - strand, within ABZR87_RS06910at 1463.028 kb on - strand, within ABZR87_RS06910

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,460,007 + +0.2
1,460,008 - +0.3
1,460,220 + ABZR87_RS06895 0.27 +1.3
1,460,220 + ABZR87_RS06895 0.27 +0.5
1,460,220 + ABZR87_RS06895 0.27 +0.2
1,460,221 - ABZR87_RS06895 0.27 -0.4
1,460,221 - ABZR87_RS06895 0.27 +0.2
1,460,221 - ABZR87_RS06895 0.27 +0.5
1,460,243 + ABZR87_RS06895 0.29 +0.2
1,460,244 - ABZR87_RS06895 0.29 -0.1
1,460,244 - ABZR87_RS06895 0.29 +0.8
1,460,298 + ABZR87_RS06895 0.36 -0.3
1,460,298 + ABZR87_RS06895 0.36 +0.0
1,460,298 + ABZR87_RS06895 0.36 -0.2
1,460,613 + ABZR87_RS06895 0.73 +0.6
1,460,613 + ABZR87_RS06895 0.73 +0.6
1,460,929 + +0.1
1,460,930 - +0.9
1,460,930 - +0.1
1,461,073 + ABZR87_RS06900 0.13 -0.6
1,461,074 - ABZR87_RS06900 0.14 -0.3
1,461,142 + ABZR87_RS06900 0.19 -0.8
1,461,169 + ABZR87_RS06900 0.21 +0.2
1,461,170 - ABZR87_RS06900 0.21 -0.9
1,461,170 - ABZR87_RS06900 0.21 -0.3
1,461,170 - ABZR87_RS06900 0.21 +0.3
1,461,170 - ABZR87_RS06900 0.21 -0.6
1,461,170 - ABZR87_RS06900 0.21 -0.0
1,461,170 - ABZR87_RS06900 0.21 -0.1
1,461,221 - ABZR87_RS06900 0.25 +0.3
1,461,268 + ABZR87_RS06900 0.29 +0.7
1,461,269 - ABZR87_RS06900 0.29 +0.1
1,461,269 - ABZR87_RS06900 0.29 +0.3
1,461,380 - ABZR87_RS06900 0.37 -0.7
1,461,511 + ABZR87_RS06900 0.48 -0.2
1,461,511 + ABZR87_RS06900 0.48 -0.3
1,461,511 + ABZR87_RS06900 0.48 +1.4
1,461,512 - ABZR87_RS06900 0.48 +0.1
1,461,616 + ABZR87_RS06900 0.56 +0.5
1,461,616 + ABZR87_RS06900 0.56 +0.1
1,461,617 - ABZR87_RS06900 0.56 +0.5
1,461,617 - ABZR87_RS06900 0.56 +0.4
1,461,617 - ABZR87_RS06900 0.56 +0.3
1,461,620 - ABZR87_RS06900 0.56 -1.4
1,461,620 - ABZR87_RS06900 0.56 -1.4
1,461,667 + ABZR87_RS06900 0.60 -0.6
1,461,667 + ABZR87_RS06900 0.60 +0.5
1,461,667 + ABZR87_RS06900 0.60 +1.9
1,461,668 - ABZR87_RS06900 0.60 +0.4
1,461,668 - ABZR87_RS06900 0.60 +0.1
1,461,668 - ABZR87_RS06900 0.60 +0.2
1,461,668 - ABZR87_RS06900 0.60 -0.6
1,461,829 + ABZR87_RS06900 0.72 -0.0
1,461,829 + ABZR87_RS06900 0.72 -0.3
1,461,829 + ABZR87_RS06900 0.72 -0.5
1,461,829 + ABZR87_RS06900 0.72 +0.0
1,461,830 - ABZR87_RS06900 0.73 +0.4
1,461,830 - ABZR87_RS06900 0.73 -0.3
1,461,830 - ABZR87_RS06900 0.73 +0.5
1,461,830 - ABZR87_RS06900 0.73 -0.9
1,461,841 + ABZR87_RS06900 0.73 +1.2
1,461,841 + ABZR87_RS06900 0.73 +0.4
1,461,934 + ABZR87_RS06900 0.81 -0.9
1,461,934 + ABZR87_RS06900 0.81 -0.0
1,461,934 + ABZR87_RS06900 0.81 -0.7
1,461,934 + ABZR87_RS06900 0.81 +1.6
1,462,321 + +0.6
1,462,322 - -0.8
1,462,425 + +0.6
1,462,425 + -1.5
1,462,425 + +0.2
1,462,426 - +0.3
1,462,509 + ABZR87_RS06905 0.41 +0.5
1,462,510 - ABZR87_RS06905 0.41 +0.8
1,462,552 - ABZR87_RS06905 0.57 -0.1
1,462,552 - ABZR87_RS06905 0.57 +0.2
1,462,552 - ABZR87_RS06905 0.57 -0.1
1,462,552 - ABZR87_RS06905 0.57 +0.3
1,462,635 + ABZR87_RS06905 0.89 +0.4
1,462,636 - ABZR87_RS06905 0.89 +2.1
1,462,636 - ABZR87_RS06905 0.89 -0.6
1,462,636 - ABZR87_RS06905 0.89 -0.4
1,462,636 - ABZR87_RS06905 0.89 +0.6
1,462,974 - ABZR87_RS06910 0.35 +0.2
1,462,974 - ABZR87_RS06910 0.35 +1.5
1,462,974 - ABZR87_RS06910 0.35 -0.3
1,462,974 - ABZR87_RS06910 0.35 +0.4
1,463,027 + ABZR87_RS06910 0.44 +0.2
1,463,027 + ABZR87_RS06910 0.44 +0.1
1,463,027 + ABZR87_RS06910 0.44 +0.1
1,463,028 - ABZR87_RS06910 0.44 -0.0
1,463,028 - ABZR87_RS06910 0.44 +0.7

Or see this region's nucleotide sequence