Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06890 and ABZR87_RS06895 are separated by 18 nucleotides ABZR87_RS06895 and ABZR87_RS06900 are separated by 55 nucleotides ABZR87_RS06900 and ABZR87_RS06905 are separated by 219 nucleotides ABZR87_RS06905 and ABZR87_RS06910 are separated by 88 nucleotides
ABZR87_RS06890: ABZR87_RS06890 - ABC transporter ATP-binding protein, at 1,459,172 to 1,459,975
_RS06890
ABZR87_RS06895: ABZR87_RS06895 - nitrate ABC transporter permease, at 1,459,994 to 1,460,845
_RS06895
ABZR87_RS06900: ABZR87_RS06900 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,460,901 to 1,462,181
_RS06900
ABZR87_RS06905: ABZR87_RS06905 - hypothetical protein, at 1,462,401 to 1,462,664
_RS06905
ABZR87_RS06910: ABZR87_RS06910 - ANTAR domain-containing protein, at 1,462,753 to 1,463,379
_RS06910
Position (kb)
1460
1461
1462
1463 Strain fitness (log2 ratio)
-1
0
1
2 at 1460.007 kb on + strand at 1460.008 kb on - strand at 1460.220 kb on + strand, within ABZR87_RS06895 at 1460.220 kb on + strand, within ABZR87_RS06895 at 1460.220 kb on + strand, within ABZR87_RS06895 at 1460.221 kb on - strand, within ABZR87_RS06895 at 1460.221 kb on - strand, within ABZR87_RS06895 at 1460.221 kb on - strand, within ABZR87_RS06895 at 1460.243 kb on + strand, within ABZR87_RS06895 at 1460.244 kb on - strand, within ABZR87_RS06895 at 1460.244 kb on - strand, within ABZR87_RS06895 at 1460.298 kb on + strand, within ABZR87_RS06895 at 1460.298 kb on + strand, within ABZR87_RS06895 at 1460.298 kb on + strand, within ABZR87_RS06895 at 1460.613 kb on + strand, within ABZR87_RS06895 at 1460.613 kb on + strand, within ABZR87_RS06895 at 1460.929 kb on + strand at 1460.930 kb on - strand at 1460.930 kb on - strand at 1461.073 kb on + strand, within ABZR87_RS06900 at 1461.074 kb on - strand, within ABZR87_RS06900 at 1461.142 kb on + strand, within ABZR87_RS06900 at 1461.169 kb on + strand, within ABZR87_RS06900 at 1461.170 kb on - strand, within ABZR87_RS06900 at 1461.170 kb on - strand, within ABZR87_RS06900 at 1461.170 kb on - strand, within ABZR87_RS06900 at 1461.170 kb on - strand, within ABZR87_RS06900 at 1461.170 kb on - strand, within ABZR87_RS06900 at 1461.170 kb on - strand, within ABZR87_RS06900 at 1461.221 kb on - strand, within ABZR87_RS06900 at 1461.268 kb on + strand, within ABZR87_RS06900 at 1461.269 kb on - strand, within ABZR87_RS06900 at 1461.269 kb on - strand, within ABZR87_RS06900 at 1461.380 kb on - strand, within ABZR87_RS06900 at 1461.511 kb on + strand, within ABZR87_RS06900 at 1461.511 kb on + strand, within ABZR87_RS06900 at 1461.511 kb on + strand, within ABZR87_RS06900 at 1461.512 kb on - strand, within ABZR87_RS06900 at 1461.616 kb on + strand, within ABZR87_RS06900 at 1461.616 kb on + strand, within ABZR87_RS06900 at 1461.617 kb on - strand, within ABZR87_RS06900 at 1461.617 kb on - strand, within ABZR87_RS06900 at 1461.617 kb on - strand, within ABZR87_RS06900 at 1461.620 kb on - strand, within ABZR87_RS06900 at 1461.620 kb on - strand, within ABZR87_RS06900 at 1461.667 kb on + strand, within ABZR87_RS06900 at 1461.667 kb on + strand, within ABZR87_RS06900 at 1461.667 kb on + strand, within ABZR87_RS06900 at 1461.668 kb on - strand, within ABZR87_RS06900 at 1461.668 kb on - strand, within ABZR87_RS06900 at 1461.668 kb on - strand, within ABZR87_RS06900 at 1461.668 kb on - strand, within ABZR87_RS06900 at 1461.829 kb on + strand, within ABZR87_RS06900 at 1461.829 kb on + strand, within ABZR87_RS06900 at 1461.829 kb on + strand, within ABZR87_RS06900 at 1461.829 kb on + strand, within ABZR87_RS06900 at 1461.830 kb on - strand, within ABZR87_RS06900 at 1461.830 kb on - strand, within ABZR87_RS06900 at 1461.830 kb on - strand, within ABZR87_RS06900 at 1461.830 kb on - strand, within ABZR87_RS06900 at 1461.841 kb on + strand, within ABZR87_RS06900 at 1461.841 kb on + strand, within ABZR87_RS06900 at 1461.934 kb on + strand, within ABZR87_RS06900 at 1461.934 kb on + strand, within ABZR87_RS06900 at 1461.934 kb on + strand, within ABZR87_RS06900 at 1461.934 kb on + strand, within ABZR87_RS06900 at 1462.321 kb on + strand at 1462.322 kb on - strand at 1462.425 kb on + strand at 1462.425 kb on + strand at 1462.425 kb on + strand at 1462.426 kb on - strand at 1462.509 kb on + strand, within ABZR87_RS06905 at 1462.510 kb on - strand, within ABZR87_RS06905 at 1462.552 kb on - strand, within ABZR87_RS06905 at 1462.552 kb on - strand, within ABZR87_RS06905 at 1462.552 kb on - strand, within ABZR87_RS06905 at 1462.552 kb on - strand, within ABZR87_RS06905 at 1462.635 kb on + strand, within ABZR87_RS06905 at 1462.636 kb on - strand, within ABZR87_RS06905 at 1462.636 kb on - strand, within ABZR87_RS06905 at 1462.636 kb on - strand, within ABZR87_RS06905 at 1462.636 kb on - strand, within ABZR87_RS06905 at 1462.974 kb on - strand, within ABZR87_RS06910 at 1462.974 kb on - strand, within ABZR87_RS06910 at 1462.974 kb on - strand, within ABZR87_RS06910 at 1462.974 kb on - strand, within ABZR87_RS06910 at 1463.027 kb on + strand, within ABZR87_RS06910 at 1463.027 kb on + strand, within ABZR87_RS06910 at 1463.027 kb on + strand, within ABZR87_RS06910 at 1463.028 kb on - strand, within ABZR87_RS06910 at 1463.028 kb on - strand, within ABZR87_RS06910
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 1,460,007 + +0.2 1,460,008 - +0.3 1,460,220 + ABZR87_RS06895 0.27 +1.3 1,460,220 + ABZR87_RS06895 0.27 +0.5 1,460,220 + ABZR87_RS06895 0.27 +0.2 1,460,221 - ABZR87_RS06895 0.27 -0.4 1,460,221 - ABZR87_RS06895 0.27 +0.2 1,460,221 - ABZR87_RS06895 0.27 +0.5 1,460,243 + ABZR87_RS06895 0.29 +0.2 1,460,244 - ABZR87_RS06895 0.29 -0.1 1,460,244 - ABZR87_RS06895 0.29 +0.8 1,460,298 + ABZR87_RS06895 0.36 -0.3 1,460,298 + ABZR87_RS06895 0.36 +0.0 1,460,298 + ABZR87_RS06895 0.36 -0.2 1,460,613 + ABZR87_RS06895 0.73 +0.6 1,460,613 + ABZR87_RS06895 0.73 +0.6 1,460,929 + +0.1 1,460,930 - +0.9 1,460,930 - +0.1 1,461,073 + ABZR87_RS06900 0.13 -0.6 1,461,074 - ABZR87_RS06900 0.14 -0.3 1,461,142 + ABZR87_RS06900 0.19 -0.8 1,461,169 + ABZR87_RS06900 0.21 +0.2 1,461,170 - ABZR87_RS06900 0.21 -0.9 1,461,170 - ABZR87_RS06900 0.21 -0.3 1,461,170 - ABZR87_RS06900 0.21 +0.3 1,461,170 - ABZR87_RS06900 0.21 -0.6 1,461,170 - ABZR87_RS06900 0.21 -0.0 1,461,170 - ABZR87_RS06900 0.21 -0.1 1,461,221 - ABZR87_RS06900 0.25 +0.3 1,461,268 + ABZR87_RS06900 0.29 +0.7 1,461,269 - ABZR87_RS06900 0.29 +0.1 1,461,269 - ABZR87_RS06900 0.29 +0.3 1,461,380 - ABZR87_RS06900 0.37 -0.7 1,461,511 + ABZR87_RS06900 0.48 -0.2 1,461,511 + ABZR87_RS06900 0.48 -0.3 1,461,511 + ABZR87_RS06900 0.48 +1.4 1,461,512 - ABZR87_RS06900 0.48 +0.1 1,461,616 + ABZR87_RS06900 0.56 +0.5 1,461,616 + ABZR87_RS06900 0.56 +0.1 1,461,617 - ABZR87_RS06900 0.56 +0.5 1,461,617 - ABZR87_RS06900 0.56 +0.4 1,461,617 - ABZR87_RS06900 0.56 +0.3 1,461,620 - ABZR87_RS06900 0.56 -1.4 1,461,620 - ABZR87_RS06900 0.56 -1.4 1,461,667 + ABZR87_RS06900 0.60 -0.6 1,461,667 + ABZR87_RS06900 0.60 +0.5 1,461,667 + ABZR87_RS06900 0.60 +1.9 1,461,668 - ABZR87_RS06900 0.60 +0.4 1,461,668 - ABZR87_RS06900 0.60 +0.1 1,461,668 - ABZR87_RS06900 0.60 +0.2 1,461,668 - ABZR87_RS06900 0.60 -0.6 1,461,829 + ABZR87_RS06900 0.72 -0.0 1,461,829 + ABZR87_RS06900 0.72 -0.3 1,461,829 + ABZR87_RS06900 0.72 -0.5 1,461,829 + ABZR87_RS06900 0.72 +0.0 1,461,830 - ABZR87_RS06900 0.73 +0.4 1,461,830 - ABZR87_RS06900 0.73 -0.3 1,461,830 - ABZR87_RS06900 0.73 +0.5 1,461,830 - ABZR87_RS06900 0.73 -0.9 1,461,841 + ABZR87_RS06900 0.73 +1.2 1,461,841 + ABZR87_RS06900 0.73 +0.4 1,461,934 + ABZR87_RS06900 0.81 -0.9 1,461,934 + ABZR87_RS06900 0.81 -0.0 1,461,934 + ABZR87_RS06900 0.81 -0.7 1,461,934 + ABZR87_RS06900 0.81 +1.6 1,462,321 + +0.6 1,462,322 - -0.8 1,462,425 + +0.6 1,462,425 + -1.5 1,462,425 + +0.2 1,462,426 - +0.3 1,462,509 + ABZR87_RS06905 0.41 +0.5 1,462,510 - ABZR87_RS06905 0.41 +0.8 1,462,552 - ABZR87_RS06905 0.57 -0.1 1,462,552 - ABZR87_RS06905 0.57 +0.2 1,462,552 - ABZR87_RS06905 0.57 -0.1 1,462,552 - ABZR87_RS06905 0.57 +0.3 1,462,635 + ABZR87_RS06905 0.89 +0.4 1,462,636 - ABZR87_RS06905 0.89 +2.1 1,462,636 - ABZR87_RS06905 0.89 -0.6 1,462,636 - ABZR87_RS06905 0.89 -0.4 1,462,636 - ABZR87_RS06905 0.89 +0.6 1,462,974 - ABZR87_RS06910 0.35 +0.2 1,462,974 - ABZR87_RS06910 0.35 +1.5 1,462,974 - ABZR87_RS06910 0.35 -0.3 1,462,974 - ABZR87_RS06910 0.35 +0.4 1,463,027 + ABZR87_RS06910 0.44 +0.2 1,463,027 + ABZR87_RS06910 0.44 +0.1 1,463,027 + ABZR87_RS06910 0.44 +0.1 1,463,028 - ABZR87_RS06910 0.44 -0.0 1,463,028 - ABZR87_RS06910 0.44 +0.7
Or see this region's nucleotide sequence