Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06890

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06885 and ABZR87_RS06890 are separated by 477 nucleotidesABZR87_RS06890 and ABZR87_RS06895 are separated by 18 nucleotidesABZR87_RS06895 and ABZR87_RS06900 are separated by 55 nucleotides ABZR87_RS06885: ABZR87_RS06885 - Crp/Fnr family transcriptional regulator, at 1,458,104 to 1,458,694 _RS06885 ABZR87_RS06890: ABZR87_RS06890 - ABC transporter ATP-binding protein, at 1,459,172 to 1,459,975 _RS06890 ABZR87_RS06895: ABZR87_RS06895 - nitrate ABC transporter permease, at 1,459,994 to 1,460,845 _RS06895 ABZR87_RS06900: ABZR87_RS06900 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,460,901 to 1,462,181 _RS06900 Position (kb) 1459 1460Strain fitness (log2 ratio) -1 0 1at 1458.309 kb on + strand, within ABZR87_RS06885at 1458.309 kb on + strand, within ABZR87_RS06885at 1458.309 kb on + strand, within ABZR87_RS06885at 1458.309 kb on + strand, within ABZR87_RS06885at 1458.309 kb on + strand, within ABZR87_RS06885at 1458.309 kb on + strand, within ABZR87_RS06885at 1458.309 kb on + strand, within ABZR87_RS06885at 1458.310 kb on - strand, within ABZR87_RS06885at 1458.310 kb on - strand, within ABZR87_RS06885at 1458.310 kb on - strand, within ABZR87_RS06885at 1458.310 kb on - strand, within ABZR87_RS06885at 1458.310 kb on - strand, within ABZR87_RS06885at 1458.318 kb on - strand, within ABZR87_RS06885at 1458.319 kb on - strand, within ABZR87_RS06885at 1458.319 kb on - strand, within ABZR87_RS06885at 1458.319 kb on - strand, within ABZR87_RS06885at 1458.412 kb on + strand, within ABZR87_RS06885at 1458.412 kb on + strand, within ABZR87_RS06885at 1458.413 kb on - strand, within ABZR87_RS06885at 1458.480 kb on + strand, within ABZR87_RS06885at 1458.480 kb on + strand, within ABZR87_RS06885at 1458.480 kb on + strand, within ABZR87_RS06885at 1458.480 kb on + strand, within ABZR87_RS06885at 1458.480 kb on + strand, within ABZR87_RS06885at 1458.481 kb on - strand, within ABZR87_RS06885at 1458.481 kb on - strand, within ABZR87_RS06885at 1458.481 kb on - strand, within ABZR87_RS06885at 1458.513 kb on + strand, within ABZR87_RS06885at 1458.513 kb on + strand, within ABZR87_RS06885at 1458.513 kb on + strand, within ABZR87_RS06885at 1458.513 kb on + strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.514 kb on - strand, within ABZR87_RS06885at 1458.657 kb on + strandat 1458.657 kb on + strandat 1458.658 kb on - strandat 1458.658 kb on - strandat 1458.772 kb on + strandat 1458.773 kb on - strandat 1458.773 kb on - strandat 1458.818 kb on + strandat 1458.818 kb on + strandat 1458.818 kb on + strandat 1458.818 kb on + strandat 1458.818 kb on + strandat 1458.818 kb on + strandat 1458.818 kb on + strandat 1458.819 kb on - strandat 1458.819 kb on - strandat 1458.819 kb on - strandat 1458.819 kb on - strandat 1458.819 kb on - strandat 1458.819 kb on - strandat 1458.820 kb on - strandat 1458.934 kb on + strandat 1458.934 kb on + strandat 1458.935 kb on - strandat 1458.935 kb on - strandat 1458.935 kb on - strandat 1458.935 kb on - strandat 1458.935 kb on - strandat 1459.245 kb on + strandat 1459.245 kb on + strandat 1459.245 kb on + strandat 1459.245 kb on + strandat 1459.246 kb on - strandat 1459.677 kb on + strand, within ABZR87_RS06890at 1459.677 kb on + strand, within ABZR87_RS06890at 1459.677 kb on + strand, within ABZR87_RS06890at 1459.677 kb on + strand, within ABZR87_RS06890at 1459.834 kb on + strand, within ABZR87_RS06890at 1460.007 kb on + strandat 1460.008 kb on - strandat 1460.220 kb on + strand, within ABZR87_RS06895at 1460.220 kb on + strand, within ABZR87_RS06895at 1460.220 kb on + strand, within ABZR87_RS06895at 1460.221 kb on - strand, within ABZR87_RS06895at 1460.221 kb on - strand, within ABZR87_RS06895at 1460.221 kb on - strand, within ABZR87_RS06895at 1460.243 kb on + strand, within ABZR87_RS06895at 1460.244 kb on - strand, within ABZR87_RS06895at 1460.244 kb on - strand, within ABZR87_RS06895at 1460.298 kb on + strand, within ABZR87_RS06895at 1460.298 kb on + strand, within ABZR87_RS06895at 1460.298 kb on + strand, within ABZR87_RS06895at 1460.613 kb on + strand, within ABZR87_RS06895at 1460.613 kb on + strand, within ABZR87_RS06895at 1460.929 kb on + strandat 1460.930 kb on - strandat 1460.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,458,309 + ABZR87_RS06885 0.35 -0.3
1,458,309 + ABZR87_RS06885 0.35 -0.4
1,458,309 + ABZR87_RS06885 0.35 +0.2
1,458,309 + ABZR87_RS06885 0.35 -0.0
1,458,309 + ABZR87_RS06885 0.35 -0.3
1,458,309 + ABZR87_RS06885 0.35 +0.3
1,458,309 + ABZR87_RS06885 0.35 -0.6
1,458,310 - ABZR87_RS06885 0.35 +1.5
1,458,310 - ABZR87_RS06885 0.35 -0.2
1,458,310 - ABZR87_RS06885 0.35 -0.1
1,458,310 - ABZR87_RS06885 0.35 -0.4
1,458,310 - ABZR87_RS06885 0.35 -0.2
1,458,318 - ABZR87_RS06885 0.36 +0.4
1,458,319 - ABZR87_RS06885 0.36 +0.3
1,458,319 - ABZR87_RS06885 0.36 +0.3
1,458,319 - ABZR87_RS06885 0.36 +0.2
1,458,412 + ABZR87_RS06885 0.52 -0.1
1,458,412 + ABZR87_RS06885 0.52 +0.8
1,458,413 - ABZR87_RS06885 0.52 +0.2
1,458,480 + ABZR87_RS06885 0.64 +0.0
1,458,480 + ABZR87_RS06885 0.64 +0.3
1,458,480 + ABZR87_RS06885 0.64 +0.2
1,458,480 + ABZR87_RS06885 0.64 +0.4
1,458,480 + ABZR87_RS06885 0.64 +0.5
1,458,481 - ABZR87_RS06885 0.64 +0.1
1,458,481 - ABZR87_RS06885 0.64 +0.2
1,458,481 - ABZR87_RS06885 0.64 +0.4
1,458,513 + ABZR87_RS06885 0.69 +0.0
1,458,513 + ABZR87_RS06885 0.69 -0.2
1,458,513 + ABZR87_RS06885 0.69 +0.2
1,458,513 + ABZR87_RS06885 0.69 -0.6
1,458,514 - ABZR87_RS06885 0.69 -0.3
1,458,514 - ABZR87_RS06885 0.69 +1.0
1,458,514 - ABZR87_RS06885 0.69 +0.6
1,458,514 - ABZR87_RS06885 0.69 -0.0
1,458,514 - ABZR87_RS06885 0.69 -0.6
1,458,514 - ABZR87_RS06885 0.69 +1.0
1,458,514 - ABZR87_RS06885 0.69 -1.2
1,458,514 - ABZR87_RS06885 0.69 +0.3
1,458,514 - ABZR87_RS06885 0.69 -0.4
1,458,657 + -0.2
1,458,657 + -0.2
1,458,658 - +0.1
1,458,658 - +0.3
1,458,772 + +0.2
1,458,773 - +1.5
1,458,773 - +0.0
1,458,818 + +1.0
1,458,818 + -1.4
1,458,818 + +0.2
1,458,818 + -0.7
1,458,818 + +0.5
1,458,818 + +0.4
1,458,818 + -0.0
1,458,819 - +0.0
1,458,819 - -0.0
1,458,819 - -0.4
1,458,819 - +0.2
1,458,819 - -0.1
1,458,819 - +0.3
1,458,820 - -0.8
1,458,934 + +0.4
1,458,934 + +0.0
1,458,935 - +0.1
1,458,935 - +0.4
1,458,935 - +0.1
1,458,935 - -0.8
1,458,935 - +0.6
1,459,245 + +0.6
1,459,245 + -0.4
1,459,245 + -0.3
1,459,245 + -0.5
1,459,246 - -0.6
1,459,677 + ABZR87_RS06890 0.63 +0.3
1,459,677 + ABZR87_RS06890 0.63 -0.2
1,459,677 + ABZR87_RS06890 0.63 +0.1
1,459,677 + ABZR87_RS06890 0.63 +0.7
1,459,834 + ABZR87_RS06890 0.82 +0.3
1,460,007 + +0.2
1,460,008 - +0.3
1,460,220 + ABZR87_RS06895 0.27 +1.3
1,460,220 + ABZR87_RS06895 0.27 +0.5
1,460,220 + ABZR87_RS06895 0.27 +0.2
1,460,221 - ABZR87_RS06895 0.27 -0.4
1,460,221 - ABZR87_RS06895 0.27 +0.2
1,460,221 - ABZR87_RS06895 0.27 +0.5
1,460,243 + ABZR87_RS06895 0.29 +0.2
1,460,244 - ABZR87_RS06895 0.29 -0.1
1,460,244 - ABZR87_RS06895 0.29 +0.8
1,460,298 + ABZR87_RS06895 0.36 -0.3
1,460,298 + ABZR87_RS06895 0.36 +0.0
1,460,298 + ABZR87_RS06895 0.36 -0.2
1,460,613 + ABZR87_RS06895 0.73 +0.6
1,460,613 + ABZR87_RS06895 0.73 +0.6
1,460,929 + +0.1
1,460,930 - +0.9
1,460,930 - +0.1

Or see this region's nucleotide sequence