Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05515

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05505 and ABZR87_RS05510 are separated by 240 nucleotidesABZR87_RS05510 and ABZR87_RS05515 are separated by 61 nucleotidesABZR87_RS05515 and ABZR87_RS05520 are separated by 55 nucleotidesABZR87_RS05520 and ABZR87_RS05525 are separated by 23 nucleotides ABZR87_RS05505: ABZR87_RS05505 - response regulator, at 1,169,164 to 1,171,386 _RS05505 ABZR87_RS05510: ABZR87_RS05510 - glutathione S-transferase, at 1,171,627 to 1,172,241 _RS05510 ABZR87_RS05515: ABZR87_RS05515 - MFS transporter, at 1,172,303 to 1,173,658 _RS05515 ABZR87_RS05520: ABZR87_RS05520 - hypothetical protein, at 1,173,714 to 1,174,136 _RS05520 ABZR87_RS05525: ABZR87_RS05525 - polysaccharide deacetylase family protein, at 1,174,160 to 1,175,215 _RS05525 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -3 -2 -1 0 1at 1171.386 kb on + strandat 1171.386 kb on + strandat 1171.386 kb on + strandat 1171.387 kb on - strandat 1171.387 kb on - strandat 1171.387 kb on - strandat 1171.387 kb on - strandat 1171.387 kb on - strandat 1171.542 kb on + strandat 1171.542 kb on + strandat 1171.542 kb on + strandat 1171.542 kb on + strandat 1171.542 kb on + strandat 1171.543 kb on - strandat 1171.543 kb on - strandat 1171.543 kb on - strandat 1171.543 kb on - strandat 1171.543 kb on - strandat 1171.543 kb on - strandat 1171.543 kb on - strandat 1171.624 kb on + strandat 1171.657 kb on + strandat 1171.657 kb on + strandat 1171.658 kb on - strandat 1171.658 kb on - strandat 1171.832 kb on - strand, within ABZR87_RS05510at 1171.948 kb on + strand, within ABZR87_RS05510at 1171.948 kb on + strand, within ABZR87_RS05510at 1171.949 kb on - strand, within ABZR87_RS05510at 1171.949 kb on - strand, within ABZR87_RS05510at 1171.949 kb on - strand, within ABZR87_RS05510at 1172.165 kb on - strand, within ABZR87_RS05510at 1172.182 kb on + strandat 1172.182 kb on + strandat 1172.183 kb on - strandat 1172.269 kb on + strandat 1172.270 kb on - strandat 1172.270 kb on - strandat 1172.724 kb on + strand, within ABZR87_RS05515at 1172.725 kb on - strand, within ABZR87_RS05515at 1172.725 kb on - strand, within ABZR87_RS05515at 1172.811 kb on + strand, within ABZR87_RS05515at 1172.811 kb on + strand, within ABZR87_RS05515at 1172.811 kb on + strand, within ABZR87_RS05515at 1172.811 kb on + strand, within ABZR87_RS05515at 1172.811 kb on + strand, within ABZR87_RS05515at 1172.811 kb on + strand, within ABZR87_RS05515at 1172.811 kb on + strand, within ABZR87_RS05515at 1172.811 kb on + strand, within ABZR87_RS05515at 1172.812 kb on - strand, within ABZR87_RS05515at 1172.812 kb on - strand, within ABZR87_RS05515at 1172.812 kb on - strand, within ABZR87_RS05515at 1172.812 kb on - strand, within ABZR87_RS05515at 1172.812 kb on - strand, within ABZR87_RS05515at 1172.812 kb on - strand, within ABZR87_RS05515at 1172.812 kb on - strand, within ABZR87_RS05515at 1172.835 kb on + strand, within ABZR87_RS05515at 1172.836 kb on - strand, within ABZR87_RS05515at 1172.836 kb on - strand, within ABZR87_RS05515at 1172.836 kb on - strand, within ABZR87_RS05515at 1172.836 kb on - strand, within ABZR87_RS05515at 1173.186 kb on + strand, within ABZR87_RS05515at 1173.195 kb on + strand, within ABZR87_RS05515at 1173.195 kb on + strand, within ABZR87_RS05515at 1173.195 kb on + strand, within ABZR87_RS05515at 1173.196 kb on - strand, within ABZR87_RS05515at 1173.196 kb on - strand, within ABZR87_RS05515at 1173.255 kb on + strand, within ABZR87_RS05515at 1173.255 kb on + strand, within ABZR87_RS05515at 1173.255 kb on + strand, within ABZR87_RS05515at 1173.343 kb on - strand, within ABZR87_RS05515at 1173.371 kb on + strand, within ABZR87_RS05515at 1173.372 kb on - strand, within ABZR87_RS05515at 1173.387 kb on + strand, within ABZR87_RS05515at 1173.388 kb on - strand, within ABZR87_RS05515at 1173.388 kb on - strand, within ABZR87_RS05515at 1173.493 kb on - strand, within ABZR87_RS05515at 1173.549 kb on + strandat 1173.549 kb on + strandat 1173.549 kb on + strandat 1173.550 kb on - strandat 1173.745 kb on + strandat 1173.746 kb on - strandat 1173.746 kb on - strandat 1173.915 kb on - strand, within ABZR87_RS05520at 1174.079 kb on + strand, within ABZR87_RS05520at 1174.079 kb on + strand, within ABZR87_RS05520at 1174.079 kb on + strand, within ABZR87_RS05520at 1174.080 kb on - strand, within ABZR87_RS05520at 1174.080 kb on - strand, within ABZR87_RS05520at 1174.260 kb on + strandat 1174.362 kb on + strand, within ABZR87_RS05525at 1174.363 kb on - strand, within ABZR87_RS05525at 1174.413 kb on + strand, within ABZR87_RS05525at 1174.413 kb on + strand, within ABZR87_RS05525at 1174.413 kb on + strand, within ABZR87_RS05525at 1174.413 kb on + strand, within ABZR87_RS05525at 1174.414 kb on - strand, within ABZR87_RS05525at 1174.458 kb on + strand, within ABZR87_RS05525at 1174.458 kb on + strand, within ABZR87_RS05525at 1174.458 kb on + strand, within ABZR87_RS05525at 1174.459 kb on - strand, within ABZR87_RS05525at 1174.533 kb on + strand, within ABZR87_RS05525at 1174.534 kb on - strand, within ABZR87_RS05525at 1174.534 kb on - strand, within ABZR87_RS05525at 1174.534 kb on - strand, within ABZR87_RS05525at 1174.534 kb on - strand, within ABZR87_RS05525at 1174.539 kb on + strand, within ABZR87_RS05525at 1174.539 kb on + strand, within ABZR87_RS05525at 1174.539 kb on + strand, within ABZR87_RS05525at 1174.539 kb on + strand, within ABZR87_RS05525at 1174.599 kb on + strand, within ABZR87_RS05525at 1174.600 kb on - strand, within ABZR87_RS05525

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,171,386 + +0.0
1,171,386 + -1.0
1,171,386 + -0.1
1,171,387 - -0.5
1,171,387 - -0.3
1,171,387 - -0.6
1,171,387 - -0.3
1,171,387 - +0.2
1,171,542 + +1.3
1,171,542 + -0.2
1,171,542 + +0.1
1,171,542 + +0.7
1,171,542 + -0.8
1,171,543 - +0.1
1,171,543 - +0.0
1,171,543 - +0.1
1,171,543 - -0.1
1,171,543 - -0.5
1,171,543 - -0.4
1,171,543 - +0.5
1,171,624 + -0.6
1,171,657 + +0.0
1,171,657 + +0.5
1,171,658 - -0.2
1,171,658 - +0.3
1,171,832 - ABZR87_RS05510 0.33 -0.9
1,171,948 + ABZR87_RS05510 0.52 +0.3
1,171,948 + ABZR87_RS05510 0.52 +0.1
1,171,949 - ABZR87_RS05510 0.52 +0.3
1,171,949 - ABZR87_RS05510 0.52 +0.3
1,171,949 - ABZR87_RS05510 0.52 +0.4
1,172,165 - ABZR87_RS05510 0.87 +0.5
1,172,182 + -0.1
1,172,182 + +0.1
1,172,183 - +0.8
1,172,269 + -0.7
1,172,270 - +0.1
1,172,270 - -0.3
1,172,724 + ABZR87_RS05515 0.31 -0.4
1,172,725 - ABZR87_RS05515 0.31 -0.4
1,172,725 - ABZR87_RS05515 0.31 -0.0
1,172,811 + ABZR87_RS05515 0.37 +0.6
1,172,811 + ABZR87_RS05515 0.37 +1.2
1,172,811 + ABZR87_RS05515 0.37 -0.2
1,172,811 + ABZR87_RS05515 0.37 +0.1
1,172,811 + ABZR87_RS05515 0.37 -0.6
1,172,811 + ABZR87_RS05515 0.37 +0.2
1,172,811 + ABZR87_RS05515 0.37 -0.4
1,172,811 + ABZR87_RS05515 0.37 +0.2
1,172,812 - ABZR87_RS05515 0.38 +0.0
1,172,812 - ABZR87_RS05515 0.38 -0.8
1,172,812 - ABZR87_RS05515 0.38 -0.7
1,172,812 - ABZR87_RS05515 0.38 +0.0
1,172,812 - ABZR87_RS05515 0.38 -0.8
1,172,812 - ABZR87_RS05515 0.38 -0.9
1,172,812 - ABZR87_RS05515 0.38 -0.1
1,172,835 + ABZR87_RS05515 0.39 -1.0
1,172,836 - ABZR87_RS05515 0.39 -0.0
1,172,836 - ABZR87_RS05515 0.39 -0.5
1,172,836 - ABZR87_RS05515 0.39 -0.0
1,172,836 - ABZR87_RS05515 0.39 -0.2
1,173,186 + ABZR87_RS05515 0.65 +0.2
1,173,195 + ABZR87_RS05515 0.66 +0.1
1,173,195 + ABZR87_RS05515 0.66 +0.5
1,173,195 + ABZR87_RS05515 0.66 -0.2
1,173,196 - ABZR87_RS05515 0.66 -0.9
1,173,196 - ABZR87_RS05515 0.66 +0.1
1,173,255 + ABZR87_RS05515 0.70 +0.1
1,173,255 + ABZR87_RS05515 0.70 -0.9
1,173,255 + ABZR87_RS05515 0.70 +0.2
1,173,343 - ABZR87_RS05515 0.77 -0.3
1,173,371 + ABZR87_RS05515 0.79 +0.2
1,173,372 - ABZR87_RS05515 0.79 -0.2
1,173,387 + ABZR87_RS05515 0.80 -0.0
1,173,388 - ABZR87_RS05515 0.80 +0.9
1,173,388 - ABZR87_RS05515 0.80 +0.2
1,173,493 - ABZR87_RS05515 0.88 +0.7
1,173,549 + +0.4
1,173,549 + -0.5
1,173,549 + -0.1
1,173,550 - -0.5
1,173,745 + -0.4
1,173,746 - +0.4
1,173,746 - -1.3
1,173,915 - ABZR87_RS05520 0.48 -0.3
1,174,079 + ABZR87_RS05520 0.86 -0.3
1,174,079 + ABZR87_RS05520 0.86 +0.4
1,174,079 + ABZR87_RS05520 0.86 -0.4
1,174,080 - ABZR87_RS05520 0.87 +1.3
1,174,080 - ABZR87_RS05520 0.87 -0.6
1,174,260 + -0.4
1,174,362 + ABZR87_RS05525 0.19 +0.2
1,174,363 - ABZR87_RS05525 0.19 +0.2
1,174,413 + ABZR87_RS05525 0.24 -0.2
1,174,413 + ABZR87_RS05525 0.24 +0.4
1,174,413 + ABZR87_RS05525 0.24 +0.3
1,174,413 + ABZR87_RS05525 0.24 -2.8
1,174,414 - ABZR87_RS05525 0.24 -0.1
1,174,458 + ABZR87_RS05525 0.28 -1.1
1,174,458 + ABZR87_RS05525 0.28 -0.7
1,174,458 + ABZR87_RS05525 0.28 +0.8
1,174,459 - ABZR87_RS05525 0.28 +0.3
1,174,533 + ABZR87_RS05525 0.35 +0.2
1,174,534 - ABZR87_RS05525 0.35 -0.6
1,174,534 - ABZR87_RS05525 0.35 -0.0
1,174,534 - ABZR87_RS05525 0.35 +0.2
1,174,534 - ABZR87_RS05525 0.35 +0.0
1,174,539 + ABZR87_RS05525 0.36 +0.7
1,174,539 + ABZR87_RS05525 0.36 +0.3
1,174,539 + ABZR87_RS05525 0.36 -0.6
1,174,539 + ABZR87_RS05525 0.36 +0.0
1,174,599 + ABZR87_RS05525 0.42 +0.0
1,174,600 - ABZR87_RS05525 0.42 +0.8

Or see this region's nucleotide sequence