Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01470

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01460 and ABZR87_RS01465 overlap by 20 nucleotidesABZR87_RS01465 and ABZR87_RS01470 are separated by 10 nucleotidesABZR87_RS01470 and ABZR87_RS01475 are separated by 17 nucleotides ABZR87_RS01460: ABZR87_RS01460 - aldose 1-epimerase, at 307,001 to 307,885 _RS01460 ABZR87_RS01465: ABZR87_RS01465 - SMP-30/gluconolactonase/LRE family protein, at 307,866 to 308,780 _RS01465 ABZR87_RS01470: ABZR87_RS01470 - L-arabinose ABC transporter permease AraH, at 308,791 to 309,798 _RS01470 ABZR87_RS01475: ABZR87_RS01475 - L-arabinose ABC transporter ATP-binding protein AraG, at 309,816 to 311,336 _RS01475 Position (kb) 308 309 310Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 307.841 kb on + strandat 307.841 kb on + strandat 307.842 kb on - strandat 307.842 kb on - strandat 307.853 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.879 kb on + strandat 307.880 kb on - strandat 307.880 kb on - strandat 307.880 kb on - strandat 307.914 kb on + strandat 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.005 kb on + strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.006 kb on - strand, within ABZR87_RS01465at 308.228 kb on + strand, within ABZR87_RS01465at 308.258 kb on - strand, within ABZR87_RS01465at 308.288 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.299 kb on + strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.300 kb on - strand, within ABZR87_RS01465at 308.395 kb on + strand, within ABZR87_RS01465at 308.395 kb on + strand, within ABZR87_RS01465at 308.396 kb on - strand, within ABZR87_RS01465at 308.396 kb on - strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.446 kb on + strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.447 kb on - strand, within ABZR87_RS01465at 308.870 kb on + strandat 308.870 kb on + strandat 308.870 kb on + strandat 308.870 kb on + strandat 308.871 kb on - strandat 308.871 kb on - strandat 308.871 kb on - strandat 309.177 kb on + strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.178 kb on - strand, within ABZR87_RS01470at 309.188 kb on + strand, within ABZR87_RS01470at 309.644 kb on + strand, within ABZR87_RS01470at 309.645 kb on - strand, within ABZR87_RS01470at 310.015 kb on + strand, within ABZR87_RS01475at 310.015 kb on + strand, within ABZR87_RS01475at 310.016 kb on - strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.027 kb on + strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.028 kb on - strand, within ABZR87_RS01475at 310.074 kb on + strand, within ABZR87_RS01475at 310.074 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.201 kb on + strand, within ABZR87_RS01475at 310.509 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.753 kb on + strand, within ABZR87_RS01475at 310.754 kb on - strand, within ABZR87_RS01475

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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307,841 + -4.0
307,841 + -1.9
307,842 - -4.4
307,842 - -3.3
307,853 + -3.9
307,879 + -2.6
307,879 + -3.3
307,879 + -3.6
307,879 + -5.1
307,879 + -3.8
307,879 + -4.7
307,879 + -3.1
307,879 + -4.9
307,880 - -2.0
307,880 - -1.5
307,880 - -2.5
307,914 + -2.8
308,005 + ABZR87_RS01465 0.15 -3.5
308,005 + ABZR87_RS01465 0.15 -3.2
308,005 + ABZR87_RS01465 0.15 +0.5
308,005 + ABZR87_RS01465 0.15 -1.5
308,006 - ABZR87_RS01465 0.15 -1.8
308,006 - ABZR87_RS01465 0.15 -1.8
308,006 - ABZR87_RS01465 0.15 -3.2
308,006 - ABZR87_RS01465 0.15 -3.2
308,228 + ABZR87_RS01465 0.40 -3.6
308,258 - ABZR87_RS01465 0.43 -4.1
308,288 + ABZR87_RS01465 0.46 -4.7
308,299 + ABZR87_RS01465 0.47 -4.5
308,299 + ABZR87_RS01465 0.47 -4.5
308,299 + ABZR87_RS01465 0.47 -3.1
308,300 - ABZR87_RS01465 0.47 -2.9
308,300 - ABZR87_RS01465 0.47 -4.4
308,300 - ABZR87_RS01465 0.47 -4.4
308,300 - ABZR87_RS01465 0.47 -4.5
308,300 - ABZR87_RS01465 0.47 -2.8
308,300 - ABZR87_RS01465 0.47 -4.5
308,395 + ABZR87_RS01465 0.58 -5.0
308,395 + ABZR87_RS01465 0.58 -4.3
308,396 - ABZR87_RS01465 0.58 -1.6
308,396 - ABZR87_RS01465 0.58 -1.0
308,446 + ABZR87_RS01465 0.63 -4.5
308,446 + ABZR87_RS01465 0.63 -3.5
308,446 + ABZR87_RS01465 0.63 -2.9
308,447 - ABZR87_RS01465 0.63 -2.6
308,447 - ABZR87_RS01465 0.63 -0.1
308,447 - ABZR87_RS01465 0.63 -4.3
308,447 - ABZR87_RS01465 0.63 -2.3
308,447 - ABZR87_RS01465 0.63 -2.2
308,447 - ABZR87_RS01465 0.63 -1.2
308,447 - ABZR87_RS01465 0.63 -3.1
308,447 - ABZR87_RS01465 0.63 -1.9
308,870 + -2.5
308,870 + -0.8
308,870 + -3.4
308,870 + -1.7
308,871 - -0.6
308,871 - -3.2
308,871 - -3.4
309,177 + ABZR87_RS01470 0.38 -2.9
309,178 - ABZR87_RS01470 0.38 -3.1
309,178 - ABZR87_RS01470 0.38 -2.5
309,178 - ABZR87_RS01470 0.38 -3.6
309,178 - ABZR87_RS01470 0.38 -2.5
309,188 + ABZR87_RS01470 0.39 -4.6
309,644 + ABZR87_RS01470 0.85 -3.2
309,645 - ABZR87_RS01470 0.85 -1.5
310,015 + ABZR87_RS01475 0.13 -3.6
310,015 + ABZR87_RS01475 0.13 -1.5
310,016 - ABZR87_RS01475 0.13 -2.4
310,027 + ABZR87_RS01475 0.14 -3.5
310,027 + ABZR87_RS01475 0.14 -3.3
310,027 + ABZR87_RS01475 0.14 -5.3
310,027 + ABZR87_RS01475 0.14 -1.5
310,028 - ABZR87_RS01475 0.14 -2.5
310,028 - ABZR87_RS01475 0.14 -2.6
310,028 - ABZR87_RS01475 0.14 -1.3
310,028 - ABZR87_RS01475 0.14 -3.1
310,028 - ABZR87_RS01475 0.14 -2.5
310,074 + ABZR87_RS01475 0.17 +0.2
310,074 + ABZR87_RS01475 0.17 -3.0
310,201 + ABZR87_RS01475 0.25 -1.7
310,201 + ABZR87_RS01475 0.25 -4.3
310,201 + ABZR87_RS01475 0.25 -4.2
310,201 + ABZR87_RS01475 0.25 -3.4
310,509 + ABZR87_RS01475 0.46 -0.8
310,753 + ABZR87_RS01475 0.62 -4.9
310,753 + ABZR87_RS01475 0.62 -1.7
310,753 + ABZR87_RS01475 0.62 -2.9
310,754 - ABZR87_RS01475 0.62 -4.2

Or see this region's nucleotide sequence