Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15280

Experiment: R2A with Aluminum chloride 3.125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Aluminum chloride 3.125 mM
3,373,166	+		LRK54_RS15275	0.22	+0.7
3,373,166	+		LRK54_RS15275	0.22	+0.5
3,373,166	+		LRK54_RS15275	0.22	+0.2
3,373,166	+		LRK54_RS15275	0.22	+1.4
3,373,166	+		LRK54_RS15275	0.22	+2.4
3,373,166	+		LRK54_RS15275	0.22	-0.7
3,373,166	+		LRK54_RS15275	0.22	+0.1
3,373,166	+		LRK54_RS15275	0.22	+0.1
3,373,166	+		LRK54_RS15275	0.22	+1.4
3,373,166	+		LRK54_RS15275	0.22	-0.0
3,373,166	+		LRK54_RS15275	0.22	+0.4
3,373,166	+		LRK54_RS15275	0.22	+1.1
3,373,166	+		LRK54_RS15275	0.22	+0.6
3,373,166	+		LRK54_RS15275	0.22	+1.4
3,373,166	+		LRK54_RS15275	0.22	-0.9
3,373,167	-		LRK54_RS15275	0.22	+2.6
3,373,167	-		LRK54_RS15275	0.22	-0.2
3,373,167	-		LRK54_RS15275	0.22	+0.2
3,373,167	-		LRK54_RS15275	0.22	+0.2
3,373,167	-		LRK54_RS15275	0.22	-0.0
3,373,167	-		LRK54_RS15275	0.22	+1.1
3,373,167	-		LRK54_RS15275	0.22	+0.8
3,373,167	-		LRK54_RS15275	0.22	-0.7
3,373,167	-		LRK54_RS15275	0.22	-1.0
3,373,167	-		LRK54_RS15275	0.22	-1.0
3,373,167	-		LRK54_RS15275	0.22	+1.3
3,373,167	-		LRK54_RS15275	0.22	+0.5
3,373,167	-		LRK54_RS15275	0.22	+0.7
3,373,167	-		LRK54_RS15275	0.22	+1.0
3,373,167	-		LRK54_RS15275	0.22	-0.0
3,373,167	-		LRK54_RS15275	0.22	-0.3
3,373,199	+		LRK54_RS15275	0.24	-0.1
3,373,199	+		LRK54_RS15275	0.24	+0.0
3,373,199	+		LRK54_RS15275	0.24	+0.6
3,373,199	+		LRK54_RS15275	0.24	-0.6
3,373,199	+		LRK54_RS15275	0.24	+0.3
3,373,199	+		LRK54_RS15275	0.24	-0.2
3,373,199	+		LRK54_RS15275	0.24	+0.8
3,373,199	+		LRK54_RS15275	0.24	+0.8
3,373,199	+		LRK54_RS15275	0.24	-0.3
3,373,199	+		LRK54_RS15275	0.24	-0.2
3,373,199	+		LRK54_RS15275	0.24	+0.4
3,373,199	+		LRK54_RS15275	0.24	-0.6
3,373,199	+		LRK54_RS15275	0.24	+0.7
3,373,199	+		LRK54_RS15275	0.24	+1.7
3,373,199	+		LRK54_RS15275	0.24	-1.0
3,373,199	+		LRK54_RS15275	0.24	-0.2
3,373,199	+		LRK54_RS15275	0.24	+0.7
3,373,199	+		LRK54_RS15275	0.24	+2.2
3,373,199	+		LRK54_RS15275	0.24	-0.9
3,373,199	+		LRK54_RS15275	0.24	-0.2
3,373,199	+		LRK54_RS15275	0.24	-1.2
3,373,199	+		LRK54_RS15275	0.24	+0.8
3,373,199	+		LRK54_RS15275	0.24	-0.2
3,373,199	+		LRK54_RS15275	0.24	+1.8
3,373,199	+		LRK54_RS15275	0.24	+3.0
3,373,199	+		LRK54_RS15275	0.24	+0.1
3,373,200	-		LRK54_RS15275	0.25	-0.4
3,373,200	-		LRK54_RS15275	0.25	+0.4
3,373,200	-		LRK54_RS15275	0.25	-0.7
3,373,200	-		LRK54_RS15275	0.25	+0.2
3,373,200	-		LRK54_RS15275	0.25	-3.5
3,373,200	-		LRK54_RS15275	0.25	-0.2
3,373,200	-		LRK54_RS15275	0.25	-0.4
3,373,200	-		LRK54_RS15275	0.25	-0.9
3,373,200	-		LRK54_RS15275	0.25	-0.3
3,373,200	-		LRK54_RS15275	0.25	-0.2
3,373,200	-		LRK54_RS15275	0.25	-1.6
3,373,200	-		LRK54_RS15275	0.25	+0.4
3,373,200	-		LRK54_RS15275	0.25	+0.2
3,373,200	-		LRK54_RS15275	0.25	+0.5
3,373,200	-		LRK54_RS15275	0.25	+2.3
3,373,200	-		LRK54_RS15275	0.25	-1.0
3,373,200	-		LRK54_RS15275	0.25	+0.8
3,373,200	-		LRK54_RS15275	0.25	-0.6
3,373,200	-		LRK54_RS15275	0.25	+0.1
3,373,200	-		LRK54_RS15275	0.25	-0.2
3,373,200	-		LRK54_RS15275	0.25	-1.7
3,373,200	-		LRK54_RS15275	0.25	-0.6
3,373,200	-		LRK54_RS15275	0.25	+0.4
3,373,200	-		LRK54_RS15275	0.25	+2.4
3,373,200	-		LRK54_RS15275	0.25	+0.4
3,373,200	-		LRK54_RS15275	0.25	+0.2
3,373,200	-		LRK54_RS15275	0.25	+0.7
3,373,200	-		LRK54_RS15275	0.25	-0.0
3,373,200	-		LRK54_RS15275	0.25	-0.8
3,373,200	-		LRK54_RS15275	0.25	-0.3
3,373,200	-		LRK54_RS15275	0.25	-0.5
3,373,200	-		LRK54_RS15275	0.25	+0.1
3,373,200	-		LRK54_RS15275	0.25	+0.9
3,373,200	-		LRK54_RS15275	0.25	+0.3
3,373,200	-		LRK54_RS15275	0.25	-0.6
3,373,200	-		LRK54_RS15275	0.25	+0.1
3,373,274	+		LRK54_RS15275	0.31	-0.6
3,373,275	-		LRK54_RS15275	0.31	+1.2
3,373,275	-		LRK54_RS15275	0.31	+0.3
3,373,275	-		LRK54_RS15275	0.31	+0.1
3,373,275	-		LRK54_RS15275	0.31	+0.4
3,373,275	-		LRK54_RS15275	0.31	+0.6
3,373,275	-		LRK54_RS15275	0.31	-0.4
3,373,275	-		LRK54_RS15275	0.31	-1.7
3,373,381	+		LRK54_RS15275	0.40	-0.6
3,373,381	+		LRK54_RS15275	0.40	-0.1
3,373,381	+		LRK54_RS15275	0.40	+0.8
3,373,381	+		LRK54_RS15275	0.40	+1.6
3,373,382	-		LRK54_RS15275	0.40	-1.3
3,373,382	-		LRK54_RS15275	0.40	-1.2
3,373,382	-		LRK54_RS15275	0.40	+0.6
3,373,382	-		LRK54_RS15275	0.40	-0.2
3,373,382	-		LRK54_RS15275	0.40	-1.1
3,373,562	+		LRK54_RS15275	0.56	+0.2
3,373,562	+		LRK54_RS15275	0.56	+0.2
3,373,562	+		LRK54_RS15275	0.56	+0.0
3,373,562	+		LRK54_RS15275	0.56	+0.4
3,373,562	+		LRK54_RS15275	0.56	-0.7
3,373,562	+		LRK54_RS15275	0.56	+1.1
3,373,562	+		LRK54_RS15275	0.56	+0.3
3,373,562	+		LRK54_RS15275	0.56	-1.5
3,373,562	+		LRK54_RS15275	0.56	+1.0
3,373,562	+		LRK54_RS15275	0.56	+0.8
3,373,562	+		LRK54_RS15275	0.56	-0.2
3,373,562	+		LRK54_RS15275	0.56	+0.6
3,373,562	+		LRK54_RS15275	0.56	+0.7
3,373,562	+		LRK54_RS15275	0.56	+0.2
3,373,562	+		LRK54_RS15275	0.56	+0.3
3,373,562	+		LRK54_RS15275	0.56	-0.9
3,373,562	+		LRK54_RS15275	0.56	+1.2
3,373,562	+		LRK54_RS15275	0.56	-0.3
3,373,562	+		LRK54_RS15275	0.56	-0.8
3,373,562	+		LRK54_RS15275	0.56	+0.8
3,373,562	+		LRK54_RS15275	0.56	+0.3
3,373,562	+		LRK54_RS15275	0.56	-0.5
3,373,562	+		LRK54_RS15275	0.56	-0.8
3,373,562	+		LRK54_RS15275	0.56	-0.2
3,373,562	+		LRK54_RS15275	0.56	-0.6
3,373,562	+		LRK54_RS15275	0.56	-0.8
3,373,563	-		LRK54_RS15275	0.56	-1.6
3,373,563	-		LRK54_RS15275	0.56	-0.9
3,373,563	-		LRK54_RS15275	0.56	+0.1
3,373,563	-		LRK54_RS15275	0.56	-0.7
3,373,563	-		LRK54_RS15275	0.56	-0.2
3,373,563	-		LRK54_RS15275	0.56	+0.1
3,373,563	-		LRK54_RS15275	0.56	+1.0
3,373,563	-		LRK54_RS15275	0.56	+0.3
3,373,563	-		LRK54_RS15275	0.56	-1.9
3,373,563	-		LRK54_RS15275	0.56	-1.6
3,373,563	-		LRK54_RS15275	0.56	+1.6
3,373,563	-		LRK54_RS15275	0.56	-1.6
3,373,563	-		LRK54_RS15275	0.56	-0.6
3,373,596	+		LRK54_RS15275	0.59	+0.3
3,373,596	+		LRK54_RS15275	0.59	+1.1
3,373,596	+		LRK54_RS15275	0.59	+0.4
3,373,596	+		LRK54_RS15275	0.59	+0.4
3,373,596	+		LRK54_RS15275	0.59	+0.7
3,373,596	+		LRK54_RS15275	0.59	-0.5
3,373,596	+		LRK54_RS15275	0.59	-0.4
3,373,596	+		LRK54_RS15275	0.59	-1.4
3,373,596	+		LRK54_RS15275	0.59	-0.6
3,373,597	-		LRK54_RS15275	0.59	+0.1
3,373,597	-		LRK54_RS15275	0.59	+1.4
3,373,742	+		LRK54_RS15275	0.71	+0.4
3,373,742	+		LRK54_RS15275	0.71	+0.5
3,373,742	+		LRK54_RS15275	0.71	-0.2
3,373,742	+		LRK54_RS15275	0.71	+0.2
3,373,742	+		LRK54_RS15275	0.71	-0.2
3,373,742	+		LRK54_RS15275	0.71	-2.4
3,373,743	-		LRK54_RS15275	0.71	-1.3
3,373,743	-		LRK54_RS15275	0.71	+0.1
3,373,743	-		LRK54_RS15275	0.71	+0.4
3,373,743	-		LRK54_RS15275	0.71	+3.8
3,373,811	+		LRK54_RS15275	0.77	-1.1
3,373,811	+		LRK54_RS15275	0.77	-1.2
3,373,811	+		LRK54_RS15275	0.77	-1.6
3,373,811	+		LRK54_RS15275	0.77	-1.7
3,373,811	+		LRK54_RS15275	0.77	+0.5
3,373,812	-		LRK54_RS15275	0.77	-0.4
3,373,812	-		LRK54_RS15275	0.77	-0.6
3,373,812	-		LRK54_RS15275	0.77	+0.6
3,373,895	+		LRK54_RS15275	0.85	+0.3
3,373,895	+		LRK54_RS15275	0.85	+1.4
3,373,895	+		LRK54_RS15275	0.85	-1.0
3,373,895	+		LRK54_RS15275	0.85	+0.2
3,373,895	+		LRK54_RS15275	0.85	+1.8
3,373,895	+		LRK54_RS15275	0.85	+1.1
3,373,895	+		LRK54_RS15275	0.85	+0.5
3,373,895	+		LRK54_RS15275	0.85	+0.6
3,373,896	-		LRK54_RS15275	0.85	-3.3
3,373,896	-		LRK54_RS15275	0.85	+0.2
3,373,896	-		LRK54_RS15275	0.85	-0.4
3,373,896	-		LRK54_RS15275	0.85	+0.2
3,373,908	+		LRK54_RS15275	0.86	-0.2
3,373,909	-		LRK54_RS15275	0.86	+0.5
3,373,909	-		LRK54_RS15275	0.86	+0.3
3,374,105	+				-1.7
3,374,105	+				+0.4
3,374,105	+				+0.2
3,374,105	+				+0.8
3,374,106	-				+0.7
3,374,141	+				+0.4
3,374,141	+				+1.6
3,374,141	+				+0.7
3,374,141	+				-2.9
3,374,141	+				-0.0
3,374,141	+				-0.3
3,374,141	+				-0.3
3,374,141	+				+0.1
3,374,142	-				-0.3
3,374,142	-				-0.4
3,374,142	-				-0.3
3,374,142	-				+0.2
3,374,142	-				-0.9
3,374,142	-				+0.1
3,374,291	+				+0.8
3,374,291	+				+1.1
3,374,291	+				+0.4
3,374,291	+				-0.3
3,374,291	+				+1.4
3,374,292	-				+0.3
3,374,292	-				-0.5
3,374,292	-				+0.8
3,374,292	-				+0.7
3,374,292	-				-0.5
3,374,292	-				-1.3
3,374,292	-				-0.7
3,374,292	-				+1.3
3,374,292	-				-0.1
3,374,321	+		LRK54_RS15280	0.12	+1.2
3,374,321	+		LRK54_RS15280	0.12	-0.7
3,374,321	+		LRK54_RS15280	0.12	-1.5
3,374,321	+		LRK54_RS15280	0.12	+0.4
3,374,321	+		LRK54_RS15280	0.12	+1.4
3,374,321	+		LRK54_RS15280	0.12	-0.5
3,374,322	-		LRK54_RS15280	0.12	-0.2
3,374,322	-		LRK54_RS15280	0.12	-0.8
3,374,322	-		LRK54_RS15280	0.12	-0.9
3,374,322	-		LRK54_RS15280	0.12	+0.7
3,374,322	-		LRK54_RS15280	0.12	-0.4
3,374,322	-		LRK54_RS15280	0.12	-0.7
3,374,322	-		LRK54_RS15280	0.12	+2.2
3,374,567	+		LRK54_RS15280	0.28	+0.3
3,374,567	+		LRK54_RS15280	0.28	-0.2
3,374,687	+		LRK54_RS15280	0.35	+0.7
3,374,687	+		LRK54_RS15280	0.35	-0.1
3,374,687	+		LRK54_RS15280	0.35	+0.6
3,374,687	+		LRK54_RS15280	0.35	+0.3
3,374,687	+		LRK54_RS15280	0.35	+0.6
3,374,688	-		LRK54_RS15280	0.35	-0.2
3,374,688	-		LRK54_RS15280	0.35	+0.8
3,374,688	-		LRK54_RS15280	0.35	+1.7
3,374,688	-		LRK54_RS15280	0.35	+0.8
3,374,688	-		LRK54_RS15280	0.35	+0.0
3,374,885	+		LRK54_RS15280	0.48	-1.2
3,374,885	+		LRK54_RS15280	0.48	-1.4
3,374,886	-		LRK54_RS15280	0.48	-0.5
3,374,886	-		LRK54_RS15280	0.48	-0.9
3,374,886	-		LRK54_RS15280	0.48	-0.2
3,374,886	-		LRK54_RS15280	0.48	+0.2
3,374,886	-		LRK54_RS15280	0.48	+0.0
3,374,886	-		LRK54_RS15280	0.48	-0.5
3,374,886	-		LRK54_RS15280	0.48	+2.4
3,374,886	-		LRK54_RS15280	0.48	+0.4
3,374,886	-		LRK54_RS15280	0.48	+0.8
3,374,886	-		LRK54_RS15280	0.48	-0.6
3,374,886	-		LRK54_RS15280	0.48	-0.6
3,374,886	-		LRK54_RS15280	0.48	-0.9
3,375,095	+		LRK54_RS15280	0.62	+0.5
3,375,095	+		LRK54_RS15280	0.62	+0.1
3,375,095	+		LRK54_RS15280	0.62	-0.6
3,375,095	+		LRK54_RS15280	0.62	+0.6
3,375,095	+		LRK54_RS15280	0.62	+0.1
3,375,095	+		LRK54_RS15280	0.62	-0.9
3,375,095	+		LRK54_RS15280	0.62	+0.5
3,375,095	+		LRK54_RS15280	0.62	+0.5
3,375,096	-		LRK54_RS15280	0.62	-0.5
3,375,096	-		LRK54_RS15280	0.62	+0.5
3,375,096	-		LRK54_RS15280	0.62	-1.0
3,375,096	-		LRK54_RS15280	0.62	+0.0
3,375,160	+		LRK54_RS15280	0.66	+0.6
3,375,242	+		LRK54_RS15280	0.71	+0.2
3,375,242	+		LRK54_RS15280	0.71	+0.6
3,375,242	+		LRK54_RS15280	0.71	+0.1
3,375,242	+		LRK54_RS15280	0.71	+0.7
3,375,242	+		LRK54_RS15280	0.71	+0.8
3,375,242	+		LRK54_RS15280	0.71	+1.7
3,375,242	+		LRK54_RS15280	0.71	-0.8
3,375,242	+		LRK54_RS15280	0.71	+0.4
3,375,242	+		LRK54_RS15280	0.71	-0.7
3,375,242	+		LRK54_RS15280	0.71	-0.9
3,375,242	+		LRK54_RS15280	0.71	-0.2
3,375,243	-		LRK54_RS15280	0.71	+1.8
3,375,243	-		LRK54_RS15280	0.71	-0.8
3,375,243	-		LRK54_RS15280	0.71	+1.7
3,375,243	-		LRK54_RS15280	0.71	+0.4
3,375,243	-		LRK54_RS15280	0.71	-0.6
3,375,243	-		LRK54_RS15280	0.71	-1.4
3,375,243	-		LRK54_RS15280	0.71	+0.7
3,375,243	-		LRK54_RS15280	0.71	+0.1
3,375,243	-		LRK54_RS15280	0.71	-0.4
3,375,243	-		LRK54_RS15280	0.71	+0.3
3,375,243	-		LRK54_RS15280	0.71	-0.0
3,375,243	-		LRK54_RS15280	0.71	-2.2
3,375,243	-		LRK54_RS15280	0.71	+0.4
3,375,243	-		LRK54_RS15280	0.71	-2.9
3,375,243	-		LRK54_RS15280	0.71	-0.5
3,375,243	-		LRK54_RS15280	0.71	+0.3
3,375,243	-		LRK54_RS15280	0.71	-0.2
3,375,359	+		LRK54_RS15280	0.79	+1.4
3,375,360	-		LRK54_RS15280	0.79	-0.1
3,375,360	-		LRK54_RS15280	0.79	+1.2
3,375,360	-		LRK54_RS15280	0.79	-0.3
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3,376,250	+		LRK54_RS15285	0.39	-2.4
3,376,250	+		LRK54_RS15285	0.39	-1.5
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3,376,250	+		LRK54_RS15285	0.39	+0.4
3,376,250	+		LRK54_RS15285	0.39	-0.2
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3,376,250	+		LRK54_RS15285	0.39	+0.2
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3,376,250	+		LRK54_RS15285	0.39	+0.2
3,376,250	+		LRK54_RS15285	0.39	-2.1
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3,376,250	+		LRK54_RS15285	0.39	-1.6
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3,376,251	-		LRK54_RS15285	0.39	-1.7
3,376,251	-		LRK54_RS15285	0.39	-0.5
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3,376,403	+		LRK54_RS15285	0.53	+0.7
3,376,403	+		LRK54_RS15285	0.53	-1.1
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3,376,409	+		LRK54_RS15285	0.53	-2.3
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3,376,409	+		LRK54_RS15285	0.53	-1.5
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3,376,535	+		LRK54_RS15285	0.64	+0.0
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3,376,556	+		LRK54_RS15285	0.66	-1.3
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3,376,556	+		LRK54_RS15285	0.66	-2.1
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3,376,556	+		LRK54_RS15285	0.66	-2.9
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3,376,556	+		LRK54_RS15285	0.66	+1.1
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