Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05915

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS05905 and HSERO_RS05910 are separated by 72 nucleotidesHSERO_RS05910 and HSERO_RS05915 are separated by 51 nucleotidesHSERO_RS05915 and HSERO_RS05920 overlap by 4 nucleotidesHSERO_RS05920 and HSERO_RS05925 are separated by 39 nucleotides HSERO_RS05905: HSERO_RS05905 - barnase inhibitor, at 1,342,540 to 1,342,938 _RS05905 HSERO_RS05910: HSERO_RS05910 - phosphoribosylglycinamide formyltransferase, at 1,343,011 to 1,343,673 _RS05910 HSERO_RS05915: HSERO_RS05915 - SAM-dependent methyltransferase, at 1,343,725 to 1,344,984 _RS05915 HSERO_RS05920: HSERO_RS05920 - endonuclease, at 1,344,981 to 1,345,565 _RS05920 HSERO_RS05925: HSERO_RS05925 - mechanosensitive ion channel protein, at 1,345,605 to 1,346,963 _RS05925 Position (kb) 1343 1344 1345Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1343.166 kb on + strand, within HSERO_RS05910at 1343.286 kb on + strand, within HSERO_RS05910at 1343.831 kb on + strandat 1343.912 kb on + strand, within HSERO_RS05915at 1343.975 kb on - strand, within HSERO_RS05915at 1343.984 kb on - strandat 1344.134 kb on + strand, within HSERO_RS05915at 1344.144 kb on + strand, within HSERO_RS05915at 1344.326 kb on - strand, within HSERO_RS05915at 1344.326 kb on - strand, within HSERO_RS05915at 1344.722 kb on + strand, within HSERO_RS05915at 1344.772 kb on + strand, within HSERO_RS05915at 1344.897 kb on + strandat 1344.980 kb on - strandat 1345.258 kb on - strand, within HSERO_RS05920at 1345.452 kb on + strand, within HSERO_RS05920at 1345.465 kb on - strand, within HSERO_RS05920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
1,343,166 + HSERO_RS05910 0.23 -2.3
1,343,286 + HSERO_RS05910 0.41 -3.8
1,343,831 + -2.6
1,343,912 + HSERO_RS05915 0.15 -0.8
1,343,975 - HSERO_RS05915 0.20 -1.4
1,343,984 - -0.2
1,344,134 + HSERO_RS05915 0.32 -2.7
1,344,144 + HSERO_RS05915 0.33 -0.8
1,344,326 - HSERO_RS05915 0.48 -3.3
1,344,326 - HSERO_RS05915 0.48 -2.1
1,344,722 + HSERO_RS05915 0.79 -1.7
1,344,772 + HSERO_RS05915 0.83 -1.0
1,344,897 + -0.3
1,344,980 - -2.9
1,345,258 - HSERO_RS05920 0.47 -1.8
1,345,452 + HSERO_RS05920 0.81 -2.7
1,345,465 - HSERO_RS05920 0.83 -2.4

Or see this region's nucleotide sequence