Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25750 and BPHYT_RS25755 are separated by 1 nucleotides BPHYT_RS25755 and BPHYT_RS25760 are separated by 202 nucleotides BPHYT_RS25760 and BPHYT_RS25765 are separated by 172 nucleotides
BPHYT_RS25750: BPHYT_RS25750 - general secretion pathway protein A, at 1,350,714 to 1,351,571
_RS25750
BPHYT_RS25755: BPHYT_RS25755 - hypothetical protein, at 1,351,573 to 1,351,788
_RS25755
BPHYT_RS25760: BPHYT_RS25760 - integrase, at 1,351,991 to 1,353,208
_RS25760
BPHYT_RS25765: BPHYT_RS25765 - phospholipase C, at 1,353,381 to 1,354,754
_RS25765
Position (kb)
1351
1352
1353
1354 Strain fitness (log2 ratio)
-1
0
1 at 1351.843 kb on + strand at 1351.888 kb on + strand at 1351.957 kb on - strand at 1352.769 kb on - strand, within BPHYT_RS25760 at 1352.870 kb on + strand, within BPHYT_RS25760 at 1353.040 kb on - strand, within BPHYT_RS25760 at 1353.055 kb on - strand, within BPHYT_RS25760 at 1353.055 kb on - strand, within BPHYT_RS25760 at 1353.210 kb on - strand at 1353.210 kb on - strand at 1353.247 kb on + strand at 1353.247 kb on + strand at 1353.252 kb on - strand at 1353.256 kb on - strand at 1353.256 kb on - strand at 1353.274 kb on - strand at 1353.394 kb on + strand at 1353.649 kb on - strand, within BPHYT_RS25765 at 1353.655 kb on + strand, within BPHYT_RS25765 at 1353.746 kb on - strand, within BPHYT_RS25765 at 1353.746 kb on - strand, within BPHYT_RS25765 at 1353.862 kb on + strand, within BPHYT_RS25765 at 1353.919 kb on + strand, within BPHYT_RS25765 at 1353.919 kb on + strand, within BPHYT_RS25765 at 1354.001 kb on + strand, within BPHYT_RS25765
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,351,843 + +0.1 1,351,888 + +0.4 1,351,957 - +0.7 1,352,769 - BPHYT_RS25760 0.64 -0.1 1,352,870 + BPHYT_RS25760 0.72 +0.0 1,353,040 - BPHYT_RS25760 0.86 -0.6 1,353,055 - BPHYT_RS25760 0.87 +0.1 1,353,055 - BPHYT_RS25760 0.87 +1.0 1,353,210 - -0.6 1,353,210 - -0.1 1,353,247 + -0.1 1,353,247 + +0.0 1,353,252 - -0.3 1,353,256 - +0.4 1,353,256 - -0.2 1,353,274 - +0.2 1,353,394 + -1.0 1,353,649 - BPHYT_RS25765 0.20 -0.6 1,353,655 + BPHYT_RS25765 0.20 +0.2 1,353,746 - BPHYT_RS25765 0.27 -1.7 1,353,746 - BPHYT_RS25765 0.27 +0.4 1,353,862 + BPHYT_RS25765 0.35 +0.2 1,353,919 + BPHYT_RS25765 0.39 -0.8 1,353,919 + BPHYT_RS25765 0.39 -1.2 1,354,001 + BPHYT_RS25765 0.45 -0.2
Or see this region's nucleotide sequence