Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03880 and BPHYT_RS03885 are separated by 243 nucleotides BPHYT_RS03885 and BPHYT_RS03890 are separated by 93 nucleotides BPHYT_RS03890 and BPHYT_RS03895 are separated by 8 nucleotides BPHYT_RS03895 and BPHYT_RS03900 are separated by 353 nucleotides
BPHYT_RS03880: BPHYT_RS03880 - LysR family transcriptional regulator, at 880,330 to 881,310
_RS03880
BPHYT_RS03885: BPHYT_RS03885 - 2-hydroxychromene-2-carboxylate isomerase, at 881,554 to 882,204
_RS03885
BPHYT_RS03890: BPHYT_RS03890 - C4-dicarboxylate ABC transporter substrate-binding protein, at 882,298 to 883,791
_RS03890
BPHYT_RS03895: BPHYT_RS03895 - hypothetical protein, at 883,800 to 884,000
_RS03895
BPHYT_RS03900: BPHYT_RS03900 - phospholipid-binding protein, at 884,354 to 884,707
_RS03900
Position (kb) 882
883
884 Strain fitness (log2 ratio) -1
0
1 at 881.419 kb on + strand at 881.506 kb on + strand at 881.507 kb on - strand at 881.530 kb on - strand at 881.549 kb on - strand at 881.555 kb on + strand at 881.642 kb on + strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.643 kb on - strand, within BPHYT_RS03885 at 881.739 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.875 kb on + strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 881.967 kb on - strand, within BPHYT_RS03885 at 882.066 kb on - strand, within BPHYT_RS03885 at 882.145 kb on - strand at 882.204 kb on + strand at 882.204 kb on + strand at 882.205 kb on - strand at 882.248 kb on - strand at 882.261 kb on + strand at 882.303 kb on - strand at 882.657 kb on - strand, within BPHYT_RS03890 at 882.683 kb on + strand, within BPHYT_RS03890 at 882.684 kb on - strand, within BPHYT_RS03890 at 882.815 kb on + strand, within BPHYT_RS03890 at 883.082 kb on + strand, within BPHYT_RS03890 at 883.130 kb on + strand, within BPHYT_RS03890 at 883.397 kb on + strand, within BPHYT_RS03890 at 883.397 kb on + strand, within BPHYT_RS03890 at 883.398 kb on - strand, within BPHYT_RS03890 at 883.398 kb on - strand, within BPHYT_RS03890 at 883.574 kb on + strand, within BPHYT_RS03890 at 883.574 kb on + strand, within BPHYT_RS03890 at 883.575 kb on - strand, within BPHYT_RS03890 at 883.575 kb on - strand, within BPHYT_RS03890 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.998 kb on + strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 884.011 kb on + strand at 884.027 kb on + strand at 884.058 kb on + strand at 884.059 kb on - strand at 884.059 kb on - strand at 884.115 kb on + strand at 884.115 kb on + strand at 884.116 kb on - strand at 884.116 kb on - strand at 884.116 kb on - strand at 884.232 kb on + strand at 884.317 kb on + strand at 884.420 kb on + strand, within BPHYT_RS03900 at 884.706 kb on - strand at 884.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 881,419 + -0.2 881,506 + -0.4 881,507 - -1.2 881,530 - +0.1 881,549 - +0.2 881,555 + +0.4 881,642 + BPHYT_RS03885 0.14 +0.0 881,643 - BPHYT_RS03885 0.14 +0.0 881,643 - BPHYT_RS03885 0.14 -0.5 881,739 + BPHYT_RS03885 0.28 +0.8 881,875 + BPHYT_RS03885 0.49 +0.0 881,875 + BPHYT_RS03885 0.49 +0.1 881,967 - BPHYT_RS03885 0.63 -0.0 881,967 - BPHYT_RS03885 0.63 -0.3 881,967 - BPHYT_RS03885 0.63 -1.4 881,967 - BPHYT_RS03885 0.63 +0.8 882,066 - BPHYT_RS03885 0.79 -0.1 882,145 - +0.1 882,204 + +1.1 882,204 + +0.2 882,205 - +0.1 882,248 - +0.2 882,261 + -0.5 882,303 - -0.2 882,657 - BPHYT_RS03890 0.24 -0.1 882,683 + BPHYT_RS03890 0.26 +0.4 882,684 - BPHYT_RS03890 0.26 +0.4 882,815 + BPHYT_RS03890 0.35 +0.9 883,082 + BPHYT_RS03890 0.52 -0.0 883,130 + BPHYT_RS03890 0.56 -0.0 883,397 + BPHYT_RS03890 0.74 +0.0 883,397 + BPHYT_RS03890 0.74 +0.1 883,398 - BPHYT_RS03890 0.74 -0.2 883,398 - BPHYT_RS03890 0.74 +0.3 883,574 + BPHYT_RS03890 0.85 +0.3 883,574 + BPHYT_RS03890 0.85 +0.0 883,575 - BPHYT_RS03890 0.85 -0.4 883,575 - BPHYT_RS03890 0.85 +0.1 883,888 + BPHYT_RS03895 0.44 -1.2 883,888 + BPHYT_RS03895 0.44 -0.0 883,888 + BPHYT_RS03895 0.44 +0.2 883,998 + -0.2 883,999 - -0.1 883,999 - +1.4 883,999 - +0.4 883,999 - +0.0 883,999 - +1.0 884,011 + -0.2 884,027 + +0.4 884,058 + +1.0 884,059 - -0.3 884,059 - +0.2 884,115 + +0.5 884,115 + -0.0 884,116 - -0.3 884,116 - +0.1 884,116 - -0.1 884,232 + -0.1 884,317 + +0.4 884,420 + BPHYT_RS03900 0.19 -0.5 884,706 - -0.1 884,706 - +0.1
Or see this region's nucleotide sequence