Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01740 and BPHYT_RS01745 overlap by 28 nucleotides BPHYT_RS01745 and BPHYT_RS01750 overlap by 10 nucleotides BPHYT_RS01750 and BPHYT_RS01755 are separated by 101 nucleotides
BPHYT_RS01740: BPHYT_RS01740 - hypothetical protein, at 396,373 to 397,395
_RS01740
BPHYT_RS01745: BPHYT_RS01745 - carbon monoxide dehydrogenase subunit G, at 397,368 to 397,964
_RS01745
BPHYT_RS01750: BPHYT_RS01750 - von Willebrand factor A, at 397,955 to 399,241
_RS01750
BPHYT_RS01755: BPHYT_RS01755 - ATPase, at 399,343 to 400,230
_RS01755
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -1
0
1
2 at 397.037 kb on - strand, within BPHYT_RS01740 at 397.324 kb on + strand at 397.325 kb on - strand at 397.327 kb on + strand at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.744 kb on + strand, within BPHYT_RS01745 at 397.835 kb on - strand, within BPHYT_RS01745 at 398.058 kb on - strand at 398.062 kb on + strand at 398.062 kb on + strand at 398.063 kb on - strand at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750 at 398.475 kb on + strand, within BPHYT_RS01750 at 398.494 kb on - strand, within BPHYT_RS01750 at 398.563 kb on - strand, within BPHYT_RS01750 at 398.756 kb on + strand, within BPHYT_RS01750 at 398.827 kb on + strand, within BPHYT_RS01750 at 398.828 kb on - strand, within BPHYT_RS01750 at 399.269 kb on - strand at 399.292 kb on + strand at 399.293 kb on - strand at 399.345 kb on - strand at 399.650 kb on + strand, within BPHYT_RS01755 at 399.651 kb on - strand, within BPHYT_RS01755 at 399.680 kb on - strand, within BPHYT_RS01755 at 399.914 kb on + strand, within BPHYT_RS01755 at 399.914 kb on + strand, within BPHYT_RS01755 at 399.914 kb on + strand, within BPHYT_RS01755 at 400.146 kb on - strand at 400.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 397,037 - BPHYT_RS01740 0.65 -0.1 397,324 + +0.3 397,325 - +0.2 397,327 + +0.1 397,457 + BPHYT_RS01745 0.15 +0.5 397,457 + BPHYT_RS01745 0.15 +0.2 397,457 + BPHYT_RS01745 0.15 +1.0 397,458 - BPHYT_RS01745 0.15 -0.5 397,458 - BPHYT_RS01745 0.15 +0.1 397,458 - BPHYT_RS01745 0.15 -0.3 397,744 + BPHYT_RS01745 0.63 +0.1 397,835 - BPHYT_RS01745 0.78 +0.2 398,058 - -0.3 398,062 + -0.1 398,062 + +0.4 398,063 - +0.2 398,160 - BPHYT_RS01750 0.16 +0.2 398,160 - BPHYT_RS01750 0.16 -0.0 398,160 - BPHYT_RS01750 0.16 -0.0 398,475 + BPHYT_RS01750 0.40 -0.2 398,494 - BPHYT_RS01750 0.42 +0.4 398,563 - BPHYT_RS01750 0.47 -0.0 398,756 + BPHYT_RS01750 0.62 -1.1 398,827 + BPHYT_RS01750 0.68 -0.6 398,828 - BPHYT_RS01750 0.68 -0.7 399,269 - +2.0 399,292 + +0.3 399,293 - +0.0 399,345 - -0.5 399,650 + BPHYT_RS01755 0.35 +0.0 399,651 - BPHYT_RS01755 0.35 +0.1 399,680 - BPHYT_RS01755 0.38 +0.3 399,914 + BPHYT_RS01755 0.64 -0.0 399,914 + BPHYT_RS01755 0.64 -0.1 399,914 + BPHYT_RS01755 0.64 +0.1 400,146 - +0.7 400,178 + +0.1
Or see this region's nucleotide sequence