Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11360

Experiment: CDM1 without Alanine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Alanine
298,279	+				-1.3
298,340	+				-2.9
298,348	+				-2.4
298,348	-				-4.2
298,356	-				-1.5
298,356	-				-1.0
298,356	-				-2.5
298,373	+				-2.2
298,380	+				-3.2
298,380	+				-3.3
298,407	+				-2.8
298,414	-				-2.3
298,415	-				-1.8
298,434	-				-1.3
298,439	-				-2.2
298,552	-				-1.0
298,585	-				-2.2
298,656	+				-0.9
298,656	+				-3.7
298,656	+				-1.7
298,656	+				-3.2
298,656	+				-1.7
298,656	+				-1.8
298,657	+				-1.5
298,664	-				-4.2
298,664	-				-1.6
298,664	-				-0.1
298,664	-				-2.6
298,678	+		BBR_RS11355	0.11	-4.1
298,680	+		BBR_RS11355	0.12	-2.8
298,686	-		BBR_RS11355	0.13	-4.5
298,688	+		BBR_RS11355	0.14	-2.8
298,688	+		BBR_RS11355	0.14	-0.4
298,717	+		BBR_RS11355	0.21	-3.4
298,722	+		BBR_RS11355	0.23	-1.7
298,753	+		BBR_RS11355	0.31	-2.4
298,753	+		BBR_RS11355	0.31	-1.8
298,753	+		BBR_RS11355	0.31	-1.3
298,766	-		BBR_RS11355	0.34	-2.8
298,766	-		BBR_RS11355	0.34	-1.3
298,789	+		BBR_RS11355	0.40	-2.4
298,797	-		BBR_RS11355	0.42	-2.5
298,797	-		BBR_RS11355	0.42	-2.9
298,812	+		BBR_RS11355	0.46	-1.8
298,848	+		BBR_RS11355	0.56	+0.6
298,848	+		BBR_RS11355	0.56	-2.6
298,851	+		BBR_RS11355	0.56	-2.4
298,853	+		BBR_RS11355	0.57	-0.6
298,861	-		BBR_RS11355	0.59	-2.2
298,861	-		BBR_RS11355	0.59	-1.2
298,867	-		BBR_RS11355	0.61	-1.6
298,874	-		BBR_RS11355	0.62	-0.7
298,956	+		BBR_RS11355	0.84	-3.7
298,956	+		BBR_RS11355	0.84	-1.7
298,980	+				-2.2
298,983	+				-1.0
298,983	+				-1.4
298,983	+				-2.2
298,995	+				-1.9
298,995	+				+0.1
298,997	-				-0.6
298,997	-				-2.0
299,003	+				-2.3
299,003	-				+0.0
299,003	-				-3.0
299,049	+				-0.1
299,060	+				-0.1
299,060	+				-1.0
299,060	+				-0.8
299,060	+				-2.8
299,070	+				-0.3
299,077	-				-2.4
299,102	+				-3.1
299,115	+				-0.8
299,150	+				-0.7
299,150	+				-1.0
299,167	+				-1.5
299,167	+				+0.1
299,169	+				-0.4
299,213	+				-2.3
299,213	+				-1.9
299,216	-				-2.4
299,223	+				+0.4
299,236	+				-1.2
299,236	+				+1.2
299,239	-				-3.0
299,241	+				+0.1
299,246	+				+0.3
299,254	-				-3.4
299,255	+				-1.1
299,265	+				-1.2
299,265	+				-0.5
299,266	-				-3.7
299,266	-				-2.5
299,270	+				-1.5
299,270	+				-0.5
299,272	-				-2.2
299,273	-				-0.1
299,278	-				-2.3
299,278	-				-3.2
299,292	+				-0.0
299,292	+				-1.1
299,302	-				-4.0
299,310	-		BBR_RS11360	0.11	-1.5
299,314	-		BBR_RS11360	0.12	-1.0
299,328	+		BBR_RS11360	0.17	-0.7
299,328	+		BBR_RS11360	0.17	-1.7
299,346	+		BBR_RS11360	0.22	-2.0
299,357	+		BBR_RS11360	0.26	-0.8
299,365	-		BBR_RS11360	0.28	-2.9
299,365	-		BBR_RS11360	0.28	-2.5
299,376	+		BBR_RS11360	0.32	-0.9
299,384	-		BBR_RS11360	0.34	-4.3
299,405	-		BBR_RS11360	0.41	-2.1
299,406	+		BBR_RS11360	0.41	+0.4
299,407	+		BBR_RS11360	0.42	-1.0
299,420	-		BBR_RS11360	0.46	-5.0
299,456	+		BBR_RS11360	0.57	-1.4
299,465	-		BBR_RS11360	0.60	-1.9
299,473	+		BBR_RS11360	0.63	-0.4
299,475	-		BBR_RS11360	0.63	-2.3
299,476	-		BBR_RS11360	0.63	-0.6
299,480	+		BBR_RS11360	0.65	-0.3
299,482	+		BBR_RS11360	0.65	+0.5
299,490	-		BBR_RS11360	0.68	-2.8
299,498	-		BBR_RS11360	0.70	-3.1
299,520	-		BBR_RS11360	0.77	-1.2
299,520	-		BBR_RS11360	0.77	-4.6
299,543	+		BBR_RS11360	0.85	-1.4
299,543	+		BBR_RS11360	0.85	-0.6
299,551	+		BBR_RS11360	0.87	-1.2
299,551	+		BBR_RS11360	0.87	-2.4
299,575	+				-1.7
299,583	-				-1.3
299,583	-				-2.6
299,583	-				-0.8
299,593	-				-1.2
299,593	-				+0.2
299,601	-				+0.2
299,601	-				-1.6
299,621	+				-2.7
299,621	+				-2.5
299,629	-				-2.4
299,645	+				-0.8
299,685	+				-0.5
299,693	-				-3.4
299,711	+				-2.1
299,719	-				+0.0
299,737	+				-1.2
299,739	+				-0.1
299,753	+				-2.3
299,754	-				-0.1
299,761	-				-1.6
299,761	-				-1.4
299,787	+				+0.6
299,804	+				-0.7
299,850	+				-1.2
299,856	-				+0.3
299,866	+				+0.0
299,891	+				-0.2
299,891	+				-0.0
299,891	+				-1.7
299,891	+				-0.4
299,899	-				-2.7
299,906	+				-1.7
299,906	+				-1.1
299,943	+				-0.9
299,950	-				-1.8
299,954	+				-1.1
299,954	+				-1.2
299,959	+				-1.5
299,959	+				-1.3
299,964	+				-1.2
299,967	-				-0.8
299,967	-				-2.7
300,004	+				-2.0
300,012	+				-2.5
300,036	-				-1.2
300,055	-				-0.5
300,055	-				-3.0
300,055	-				-0.3
300,096	+				-1.7
300,097	+				-0.5
300,097	+				-1.6
300,097	+				+0.3
300,097	+				-2.9
300,102	+				-1.5
300,102	+				-0.4
300,105	+				-0.7
300,105	-				-1.7
300,120	-				-1.0
300,122	+				+0.2
300,127	+				-1.0
300,127	+				-0.6
300,127	+				-2.1
300,127	+				-2.4
300,130	-				-2.2
300,135	-				-3.3
300,135	-				+0.2
300,135	-				-0.9
300,135	-				-0.8
300,135	-				-1.3
300,135	-				-1.3
300,140	-				-1.8
300,146	+				-1.6
300,147	+				-3.5
300,155	-				-1.5
300,155	-				-1.9
300,160	-				-0.7
300,172	-				-0.9
300,178	-				-3.6
300,192	-				-3.3
300,192	-				+0.6
300,192	-				-0.7
300,227	+				-2.4
300,232	+				-1.9
300,269	-				-2.0
300,276	-				-0.8
300,276	-				-2.0
300,317	+				-1.8
300,325	-				-3.5
300,351	+				-2.2
300,359	+				-1.4
300,359	-				-0.1
300,364	+				-1.3
300,367	-				-1.2
300,367	-				-0.2
300,367	-				-1.4
300,374	+				-0.8
300,374	+				-1.3
300,374	+				-3.8
300,381	-				-3.6
300,382	-				-1.5
300,401	+				-0.6
300,419	+				-3.1
300,494	+				+0.1
300,494	+				-2.2
300,502	-				-0.0
300,502	-				-1.5
300,516	+				-0.9
300,516	+				-2.0
300,586	-				-2.7
300,588	+				-0.7
300,588	-				-1.4