Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28040

Experiment: Cisplatin 0.0032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_28035 and AO356_28040 are separated by 16 nucleotidesAO356_28040 and AO356_28045 are separated by 10 nucleotidesAO356_28045 and AO356_28050 are separated by 5 nucleotides AO356_28035: AO356_28035 - MBL fold metallo-hydrolase, at 6,403,004 to 6,403,942 _28035 AO356_28040: AO356_28040 - quinoprotein dehydrogenase-associated SoxYZ-like carrier, at 6,403,959 to 6,404,714 _28040 AO356_28045: AO356_28045 - amino acid ABC transporter substrate-binding protein, at 6,404,725 to 6,405,600 _28045 AO356_28050: AO356_28050 - cytochrome c-550 PedF, at 6,405,606 to 6,406,067 _28050 Position (kb) 6403 6404 6405Strain fitness (log2 ratio) -2 -1 0 1 2at 6403.059 kb on + strandat 6403.075 kb on + strandat 6403.090 kb on - strandat 6403.337 kb on - strand, within AO356_28035at 6403.379 kb on + strand, within AO356_28035at 6403.379 kb on + strand, within AO356_28035at 6403.540 kb on - strand, within AO356_28035at 6403.637 kb on + strand, within AO356_28035at 6403.637 kb on + strand, within AO356_28035at 6403.638 kb on - strand, within AO356_28035at 6403.638 kb on - strand, within AO356_28035at 6403.638 kb on - strand, within AO356_28035at 6404.113 kb on - strand, within AO356_28040at 6404.113 kb on - strand, within AO356_28040at 6404.113 kb on - strand, within AO356_28040at 6404.726 kb on + strandat 6404.732 kb on + strandat 6404.732 kb on + strandat 6404.733 kb on - strandat 6404.733 kb on - strandat 6405.077 kb on + strand, within AO356_28045at 6405.077 kb on + strand, within AO356_28045at 6405.167 kb on + strand, within AO356_28045at 6405.167 kb on + strand, within AO356_28045at 6405.168 kb on - strand, within AO356_28045at 6405.168 kb on - strand, within AO356_28045at 6405.309 kb on - strand, within AO356_28045at 6405.332 kb on + strand, within AO356_28045at 6405.332 kb on + strand, within AO356_28045at 6405.332 kb on + strand, within AO356_28045at 6405.332 kb on + strand, within AO356_28045at 6405.332 kb on + strand, within AO356_28045at 6405.332 kb on + strand, within AO356_28045at 6405.332 kb on + strand, within AO356_28045at 6405.332 kb on + strand, within AO356_28045at 6405.486 kb on - strand, within AO356_28045at 6405.635 kb on - strandat 6405.635 kb on - strandat 6405.670 kb on + strand, within AO356_28050at 6405.691 kb on + strand, within AO356_28050at 6405.692 kb on - strand, within AO356_28050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
remove
6,403,059 + +1.7
6,403,075 + -0.9
6,403,090 - +0.7
6,403,337 - AO356_28035 0.35 +1.0
6,403,379 + AO356_28035 0.40 -0.6
6,403,379 + AO356_28035 0.40 -0.7
6,403,540 - AO356_28035 0.57 -0.8
6,403,637 + AO356_28035 0.67 +0.8
6,403,637 + AO356_28035 0.67 +0.2
6,403,638 - AO356_28035 0.68 +0.2
6,403,638 - AO356_28035 0.68 +0.1
6,403,638 - AO356_28035 0.68 -2.7
6,404,113 - AO356_28040 0.20 +1.0
6,404,113 - AO356_28040 0.20 -0.1
6,404,113 - AO356_28040 0.20 +2.0
6,404,726 + +1.3
6,404,732 + +1.3
6,404,732 + +1.4
6,404,733 - -1.3
6,404,733 - +0.8
6,405,077 + AO356_28045 0.40 +0.5
6,405,077 + AO356_28045 0.40 -0.3
6,405,167 + AO356_28045 0.50 +1.1
6,405,167 + AO356_28045 0.50 +0.3
6,405,168 - AO356_28045 0.51 -0.1
6,405,168 - AO356_28045 0.51 -1.1
6,405,309 - AO356_28045 0.67 -0.1
6,405,332 + AO356_28045 0.69 -0.2
6,405,332 + AO356_28045 0.69 +0.9
6,405,332 + AO356_28045 0.69 -1.1
6,405,332 + AO356_28045 0.69 +0.2
6,405,332 + AO356_28045 0.69 -0.7
6,405,332 + AO356_28045 0.69 +1.4
6,405,332 + AO356_28045 0.69 -0.1
6,405,332 + AO356_28045 0.69 -0.2
6,405,486 - AO356_28045 0.87 +0.8
6,405,635 - +0.3
6,405,635 - +0.7
6,405,670 + AO356_28050 0.14 +1.1
6,405,691 + AO356_28050 0.18 +0.7
6,405,692 - AO356_28050 0.19 -0.1

Or see this region's nucleotide sequence