Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27425 and AO356_27430 are separated by 276 nucleotides AO356_27430 and AO356_27435 are separated by 22 nucleotides AO356_27435 and AO356_27440 are separated by 3 nucleotides
AO356_27425: AO356_27425 - porin, at 6,249,552 to 6,250,832
_27425
AO356_27430: AO356_27430 - hypothetical protein, at 6,251,109 to 6,251,804
_27430
AO356_27435: AO356_27435 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 6,251,827 to 6,252,720
_27435
AO356_27440: AO356_27440 - 2-keto-4-pentenoate hydratase, at 6,252,724 to 6,253,524
_27440
Position (kb)
6251
6252 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6250.540 kb on + strand, within AO356_27425 at 6250.541 kb on - strand, within AO356_27425 at 6250.676 kb on - strand, within AO356_27425 at 6250.676 kb on - strand, within AO356_27425 at 6250.818 kb on - strand at 6250.853 kb on + strand at 6250.854 kb on - strand at 6250.972 kb on - strand at 6251.023 kb on - strand at 6251.144 kb on - strand at 6251.155 kb on + strand at 6251.155 kb on + strand at 6251.156 kb on - strand at 6251.176 kb on - strand at 6251.239 kb on + strand, within AO356_27430 at 6251.239 kb on + strand, within AO356_27430 at 6251.240 kb on - strand, within AO356_27430 at 6251.367 kb on - strand, within AO356_27430 at 6251.367 kb on - strand, within AO356_27430 at 6251.369 kb on + strand, within AO356_27430 at 6251.429 kb on + strand, within AO356_27430 at 6251.429 kb on + strand, within AO356_27430 at 6251.429 kb on + strand, within AO356_27430 at 6251.430 kb on - strand, within AO356_27430 at 6251.470 kb on + strand, within AO356_27430 at 6251.497 kb on + strand, within AO356_27430 at 6251.497 kb on + strand, within AO356_27430 at 6251.498 kb on - strand, within AO356_27430 at 6251.498 kb on - strand, within AO356_27430 at 6251.587 kb on + strand, within AO356_27430 at 6251.587 kb on + strand, within AO356_27430 at 6251.587 kb on + strand, within AO356_27430 at 6251.588 kb on - strand, within AO356_27430 at 6251.588 kb on - strand, within AO356_27430 at 6251.638 kb on + strand, within AO356_27430 at 6251.638 kb on + strand, within AO356_27430 at 6251.639 kb on - strand, within AO356_27430 at 6251.734 kb on + strand, within AO356_27430 at 6251.734 kb on + strand, within AO356_27430 at 6251.782 kb on - strand at 6251.782 kb on - strand at 6251.804 kb on + strand at 6251.882 kb on + strand at 6251.882 kb on + strand at 6251.882 kb on + strand at 6251.882 kb on + strand at 6251.883 kb on - strand at 6251.883 kb on - strand at 6251.883 kb on - strand at 6251.883 kb on - strand at 6252.045 kb on - strand, within AO356_27435 at 6252.045 kb on - strand, within AO356_27435 at 6252.055 kb on - strand, within AO356_27435 at 6252.084 kb on + strand, within AO356_27435 at 6252.228 kb on - strand, within AO356_27435 at 6252.456 kb on + strand, within AO356_27435 at 6252.456 kb on + strand, within AO356_27435 at 6252.457 kb on - strand, within AO356_27435 at 6252.483 kb on - strand, within AO356_27435 at 6252.483 kb on - strand, within AO356_27435 at 6252.520 kb on + strand, within AO356_27435 at 6252.520 kb on + strand, within AO356_27435 at 6252.521 kb on - strand, within AO356_27435 at 6252.521 kb on - strand, within AO356_27435 at 6252.712 kb on + strand at 6252.713 kb on - strand at 6252.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 6,250,540 + AO356_27425 0.77 +0.4 6,250,541 - AO356_27425 0.77 -1.4 6,250,676 - AO356_27425 0.88 +0.1 6,250,676 - AO356_27425 0.88 -0.4 6,250,818 - +1.2 6,250,853 + +0.0 6,250,854 - +0.9 6,250,972 - -2.4 6,251,023 - +0.7 6,251,144 - +0.6 6,251,155 + -0.5 6,251,155 + +1.2 6,251,156 - +0.5 6,251,176 - +0.4 6,251,239 + AO356_27430 0.19 +0.5 6,251,239 + AO356_27430 0.19 +1.6 6,251,240 - AO356_27430 0.19 +0.9 6,251,367 - AO356_27430 0.37 +1.5 6,251,367 - AO356_27430 0.37 +1.5 6,251,369 + AO356_27430 0.37 -2.6 6,251,429 + AO356_27430 0.46 +0.3 6,251,429 + AO356_27430 0.46 +1.6 6,251,429 + AO356_27430 0.46 +1.1 6,251,430 - AO356_27430 0.46 +2.8 6,251,470 + AO356_27430 0.52 +0.9 6,251,497 + AO356_27430 0.56 +1.2 6,251,497 + AO356_27430 0.56 +0.0 6,251,498 - AO356_27430 0.56 -0.4 6,251,498 - AO356_27430 0.56 +0.5 6,251,587 + AO356_27430 0.69 -0.1 6,251,587 + AO356_27430 0.69 +1.3 6,251,587 + AO356_27430 0.69 +0.8 6,251,588 - AO356_27430 0.69 +0.8 6,251,588 - AO356_27430 0.69 -1.2 6,251,638 + AO356_27430 0.76 +1.4 6,251,638 + AO356_27430 0.76 -0.2 6,251,639 - AO356_27430 0.76 -0.3 6,251,734 + AO356_27430 0.90 -0.4 6,251,734 + AO356_27430 0.90 -2.2 6,251,782 - +0.3 6,251,782 - -0.3 6,251,804 + +0.2 6,251,882 + +0.5 6,251,882 + -1.3 6,251,882 + +0.2 6,251,882 + -0.3 6,251,883 - +1.5 6,251,883 - -0.3 6,251,883 - -1.4 6,251,883 - -0.4 6,252,045 - AO356_27435 0.24 -1.4 6,252,045 - AO356_27435 0.24 -0.4 6,252,055 - AO356_27435 0.26 +1.1 6,252,084 + AO356_27435 0.29 -0.4 6,252,228 - AO356_27435 0.45 -1.4 6,252,456 + AO356_27435 0.70 -1.1 6,252,456 + AO356_27435 0.70 +0.7 6,252,457 - AO356_27435 0.70 -1.0 6,252,483 - AO356_27435 0.73 -0.8 6,252,483 - AO356_27435 0.73 -1.7 6,252,520 + AO356_27435 0.78 -1.4 6,252,520 + AO356_27435 0.78 +0.2 6,252,521 - AO356_27435 0.78 +1.3 6,252,521 - AO356_27435 0.78 +0.2 6,252,712 + +0.3 6,252,713 - -0.3 6,252,726 - +0.0
Or see this region's nucleotide sequence