Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23745

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23735 and AO356_23740 are separated by 130 nucleotidesAO356_23740 and AO356_23745 are separated by 99 nucleotidesAO356_23745 and AO356_23750 overlap by 1 nucleotidesAO356_23750 and AO356_23755 are separated by 3 nucleotides AO356_23735: AO356_23735 - FAD-binding oxidoreductase, at 5,328,152 to 5,330,206 _23735 AO356_23740: AO356_23740 - glutathione S-transferase, at 5,330,337 to 5,330,966 _23740 AO356_23745: AO356_23745 - LysR family transcriptional regulator, at 5,331,066 to 5,331,986 _23745 AO356_23750: AO356_23750 - LysR family transcriptional regulator, at 5,331,986 to 5,332,897 _23750 AO356_23755: AO356_23755 - AraC family transcriptional regulator, at 5,332,901 to 5,333,824 _23755 Position (kb) 5331 5332Strain fitness (log2 ratio) -2 -1 0 1 2at 5330.108 kb on + strandat 5330.108 kb on + strandat 5330.244 kb on + strandat 5330.256 kb on - strandat 5330.331 kb on + strandat 5330.331 kb on + strandat 5330.331 kb on + strandat 5330.332 kb on - strandat 5330.332 kb on - strandat 5330.562 kb on + strand, within AO356_23740at 5330.578 kb on - strand, within AO356_23740at 5330.578 kb on - strand, within AO356_23740at 5330.578 kb on - strand, within AO356_23740at 5330.826 kb on + strand, within AO356_23740at 5330.826 kb on + strand, within AO356_23740at 5330.827 kb on - strand, within AO356_23740at 5330.832 kb on + strand, within AO356_23740at 5330.832 kb on + strand, within AO356_23740at 5330.832 kb on + strand, within AO356_23740at 5330.832 kb on + strand, within AO356_23740at 5330.833 kb on - strand, within AO356_23740at 5330.833 kb on - strand, within AO356_23740at 5331.030 kb on + strandat 5331.030 kb on + strandat 5331.030 kb on + strandat 5331.030 kb on + strandat 5331.031 kb on - strandat 5331.031 kb on - strandat 5331.031 kb on - strandat 5331.031 kb on - strandat 5331.031 kb on - strandat 5331.031 kb on - strandat 5331.208 kb on + strand, within AO356_23745at 5331.208 kb on + strand, within AO356_23745at 5331.208 kb on + strand, within AO356_23745at 5331.208 kb on + strand, within AO356_23745at 5331.209 kb on - strand, within AO356_23745at 5331.209 kb on - strand, within AO356_23745at 5331.209 kb on - strand, within AO356_23745at 5331.218 kb on + strand, within AO356_23745at 5331.258 kb on + strand, within AO356_23745at 5331.324 kb on + strand, within AO356_23745at 5331.381 kb on + strand, within AO356_23745at 5331.381 kb on + strand, within AO356_23745at 5331.381 kb on + strand, within AO356_23745at 5331.382 kb on - strand, within AO356_23745at 5331.382 kb on - strand, within AO356_23745at 5331.406 kb on - strand, within AO356_23745at 5331.406 kb on - strand, within AO356_23745at 5331.406 kb on - strand, within AO356_23745at 5331.547 kb on + strand, within AO356_23745at 5331.548 kb on - strand, within AO356_23745at 5331.576 kb on + strand, within AO356_23745at 5331.576 kb on + strand, within AO356_23745at 5331.789 kb on + strand, within AO356_23745at 5331.876 kb on + strand, within AO356_23745at 5331.876 kb on + strand, within AO356_23745at 5331.877 kb on - strand, within AO356_23745at 5331.877 kb on - strand, within AO356_23745at 5331.877 kb on - strand, within AO356_23745at 5331.911 kb on + strandat 5331.912 kb on - strandat 5331.912 kb on - strandat 5331.912 kb on - strandat 5331.970 kb on + strandat 5332.012 kb on - strandat 5332.298 kb on + strand, within AO356_23750at 5332.299 kb on - strand, within AO356_23750at 5332.299 kb on - strand, within AO356_23750at 5332.326 kb on - strand, within AO356_23750at 5332.326 kb on - strand, within AO356_23750at 5332.428 kb on + strand, within AO356_23750at 5332.429 kb on - strand, within AO356_23750at 5332.497 kb on - strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.509 kb on - strand, within AO356_23750at 5332.509 kb on - strand, within AO356_23750at 5332.509 kb on - strand, within AO356_23750at 5332.709 kb on + strand, within AO356_23750at 5332.709 kb on + strand, within AO356_23750at 5332.718 kb on + strand, within AO356_23750at 5332.719 kb on - strand, within AO356_23750at 5332.719 kb on - strand, within AO356_23750at 5332.719 kb on - strand, within AO356_23750at 5332.719 kb on - strand, within AO356_23750at 5332.724 kb on + strand, within AO356_23750at 5332.725 kb on - strand, within AO356_23750at 5332.725 kb on - strand, within AO356_23750at 5332.763 kb on + strand, within AO356_23750at 5332.764 kb on - strand, within AO356_23750at 5332.797 kb on - strand, within AO356_23750at 5332.797 kb on - strand, within AO356_23750at 5332.844 kb on + strandat 5332.844 kb on + strandat 5332.844 kb on + strandat 5332.844 kb on + strandat 5332.845 kb on - strandat 5332.845 kb on - strandat 5332.888 kb on + strandat 5332.889 kb on - strandat 5332.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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5,330,108 + +0.8
5,330,108 + -1.3
5,330,244 + -1.9
5,330,256 - +0.3
5,330,331 + +0.1
5,330,331 + -0.0
5,330,331 + +1.2
5,330,332 - -0.5
5,330,332 - -0.5
5,330,562 + AO356_23740 0.36 -0.1
5,330,578 - AO356_23740 0.38 +0.4
5,330,578 - AO356_23740 0.38 +0.7
5,330,578 - AO356_23740 0.38 +0.1
5,330,826 + AO356_23740 0.78 -0.3
5,330,826 + AO356_23740 0.78 -0.2
5,330,827 - AO356_23740 0.78 -0.2
5,330,832 + AO356_23740 0.79 -0.5
5,330,832 + AO356_23740 0.79 +0.4
5,330,832 + AO356_23740 0.79 -0.4
5,330,832 + AO356_23740 0.79 +0.3
5,330,833 - AO356_23740 0.79 +0.1
5,330,833 - AO356_23740 0.79 +0.7
5,331,030 + -0.6
5,331,030 + -0.2
5,331,030 + +0.1
5,331,030 + -0.4
5,331,031 - +0.3
5,331,031 - +0.8
5,331,031 - -1.1
5,331,031 - +0.5
5,331,031 - -1.1
5,331,031 - -1.2
5,331,208 + AO356_23745 0.15 +0.1
5,331,208 + AO356_23745 0.15 -0.2
5,331,208 + AO356_23745 0.15 -0.7
5,331,208 + AO356_23745 0.15 -0.3
5,331,209 - AO356_23745 0.16 -0.6
5,331,209 - AO356_23745 0.16 -0.2
5,331,209 - AO356_23745 0.16 +0.4
5,331,218 + AO356_23745 0.17 +0.6
5,331,258 + AO356_23745 0.21 -1.1
5,331,324 + AO356_23745 0.28 -1.5
5,331,381 + AO356_23745 0.34 -1.3
5,331,381 + AO356_23745 0.34 -0.5
5,331,381 + AO356_23745 0.34 +0.2
5,331,382 - AO356_23745 0.34 -0.2
5,331,382 - AO356_23745 0.34 +2.1
5,331,406 - AO356_23745 0.37 +0.3
5,331,406 - AO356_23745 0.37 +0.8
5,331,406 - AO356_23745 0.37 +0.5
5,331,547 + AO356_23745 0.52 -0.1
5,331,548 - AO356_23745 0.52 -1.0
5,331,576 + AO356_23745 0.55 -0.7
5,331,576 + AO356_23745 0.55 -1.8
5,331,789 + AO356_23745 0.79 -1.1
5,331,876 + AO356_23745 0.88 -0.9
5,331,876 + AO356_23745 0.88 +0.5
5,331,877 - AO356_23745 0.88 +1.1
5,331,877 - AO356_23745 0.88 +0.7
5,331,877 - AO356_23745 0.88 -0.4
5,331,911 + -0.0
5,331,912 - -1.5
5,331,912 - +1.4
5,331,912 - +0.4
5,331,970 + -0.2
5,332,012 - +0.3
5,332,298 + AO356_23750 0.34 +0.6
5,332,299 - AO356_23750 0.34 +0.1
5,332,299 - AO356_23750 0.34 -1.0
5,332,326 - AO356_23750 0.37 +0.7
5,332,326 - AO356_23750 0.37 +0.0
5,332,428 + AO356_23750 0.48 -0.9
5,332,429 - AO356_23750 0.49 +0.3
5,332,497 - AO356_23750 0.56 -1.2
5,332,508 + AO356_23750 0.57 +1.0
5,332,508 + AO356_23750 0.57 -0.4
5,332,508 + AO356_23750 0.57 -1.0
5,332,508 + AO356_23750 0.57 -0.2
5,332,508 + AO356_23750 0.57 -0.5
5,332,509 - AO356_23750 0.57 +1.2
5,332,509 - AO356_23750 0.57 -2.3
5,332,509 - AO356_23750 0.57 +0.3
5,332,709 + AO356_23750 0.79 +1.2
5,332,709 + AO356_23750 0.79 +0.2
5,332,718 + AO356_23750 0.80 +0.0
5,332,719 - AO356_23750 0.80 +1.3
5,332,719 - AO356_23750 0.80 -0.5
5,332,719 - AO356_23750 0.80 -0.2
5,332,719 - AO356_23750 0.80 -0.4
5,332,724 + AO356_23750 0.81 -1.0
5,332,725 - AO356_23750 0.81 +0.5
5,332,725 - AO356_23750 0.81 -0.6
5,332,763 + AO356_23750 0.85 +1.5
5,332,764 - AO356_23750 0.85 -0.4
5,332,797 - AO356_23750 0.89 -1.2
5,332,797 - AO356_23750 0.89 -0.5
5,332,844 + -1.8
5,332,844 + -0.3
5,332,844 + +0.6
5,332,844 + +1.4
5,332,845 - +1.8
5,332,845 - +0.6
5,332,888 + +0.7
5,332,889 - -0.1
5,332,956 + +0.2

Or see this region's nucleotide sequence