Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19290

Experiment: Cisplatin 0.0032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_19265 and AO356_19270 are separated by 160 nucleotidesAO356_19270 and AO356_19275 are separated by 19 nucleotidesAO356_19275 and AO356_19280 are separated by 173 nucleotidesAO356_19280 and AO356_19285 are separated by 17 nucleotidesAO356_19285 and AO356_19290 are separated by 92 nucleotidesAO356_19290 and AO356_19295 are separated by 31 nucleotides AO356_19265: AO356_19265 - recombination-associated protein RdgC, at 4,325,639 to 4,326,559 _19265 AO356_19270: AO356_19270 - tRNA-Val, at 4,326,720 to 4,326,795 _19270 AO356_19275: AO356_19275 - tRNA-Asp, at 4,326,815 to 4,326,891 _19275 AO356_19280: AO356_19280 - tRNA-Val, at 4,327,065 to 4,327,140 _19280 AO356_19285: AO356_19285 - tRNA-Asp, at 4,327,158 to 4,327,234 _19285 AO356_19290: AO356_19290 - catalase, at 4,327,327 to 4,328,463 _19290 AO356_19295: AO356_19295 - hypothetical protein, at 4,328,495 to 4,330,300 _19295 Position (kb) 4327 4328 4329Strain fitness (log2 ratio) -2 -1 0 1 2at 4326.328 kb on + strand, within AO356_19265at 4326.435 kb on + strand, within AO356_19265at 4326.435 kb on + strand, within AO356_19265at 4326.436 kb on - strand, within AO356_19265at 4326.534 kb on + strandat 4326.535 kb on - strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.579 kb on + strandat 4326.580 kb on - strandat 4326.580 kb on - strandat 4326.580 kb on - strandat 4326.594 kb on + strandat 4326.613 kb on + strandat 4326.660 kb on + strandat 4326.693 kb on + strandat 4326.892 kb on + strandat 4327.010 kb on + strandat 4327.010 kb on + strandat 4327.073 kb on - strand, within AO356_19280at 4327.154 kb on - strandat 4327.166 kb on - strand, within AO356_19285at 4327.329 kb on - strandat 4327.373 kb on + strandat 4327.373 kb on + strandat 4327.374 kb on - strandat 4327.374 kb on - strandat 4327.374 kb on - strandat 4327.574 kb on + strand, within AO356_19290at 4327.574 kb on + strand, within AO356_19290at 4327.574 kb on + strand, within AO356_19290at 4327.574 kb on + strand, within AO356_19290at 4327.574 kb on + strand, within AO356_19290at 4327.574 kb on + strand, within AO356_19290at 4327.574 kb on + strand, within AO356_19290at 4327.575 kb on - strand, within AO356_19290at 4327.575 kb on - strand, within AO356_19290at 4327.575 kb on - strand, within AO356_19290at 4327.575 kb on - strand, within AO356_19290at 4327.575 kb on - strand, within AO356_19290at 4327.575 kb on - strand, within AO356_19290at 4327.575 kb on - strand, within AO356_19290at 4327.575 kb on - strand, within AO356_19290at 4327.636 kb on + strand, within AO356_19290at 4327.698 kb on + strand, within AO356_19290at 4327.698 kb on + strand, within AO356_19290at 4327.700 kb on + strand, within AO356_19290at 4327.700 kb on + strand, within AO356_19290at 4327.700 kb on + strand, within AO356_19290at 4327.700 kb on + strand, within AO356_19290at 4327.700 kb on + strand, within AO356_19290at 4327.700 kb on + strand, within AO356_19290at 4327.700 kb on + strand, within AO356_19290at 4327.700 kb on + strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.701 kb on - strand, within AO356_19290at 4327.763 kb on + strand, within AO356_19290at 4327.781 kb on + strand, within AO356_19290at 4327.781 kb on + strand, within AO356_19290at 4327.782 kb on - strand, within AO356_19290at 4327.928 kb on + strand, within AO356_19290at 4328.235 kb on - strand, within AO356_19290at 4328.478 kb on - strandat 4328.478 kb on - strandat 4328.496 kb on + strandat 4328.496 kb on + strandat 4328.496 kb on + strandat 4328.496 kb on + strandat 4328.497 kb on - strandat 4328.497 kb on - strandat 4328.497 kb on - strandat 4328.497 kb on - strandat 4328.535 kb on + strandat 4328.535 kb on + strandat 4328.536 kb on - strandat 4328.656 kb on + strandat 4328.657 kb on - strandat 4328.657 kb on - strandat 4328.657 kb on - strandat 4328.706 kb on + strand, within AO356_19295at 4328.707 kb on - strand, within AO356_19295at 4328.722 kb on + strand, within AO356_19295at 4328.723 kb on - strand, within AO356_19295at 4328.724 kb on + strand, within AO356_19295at 4328.724 kb on + strand, within AO356_19295at 4328.724 kb on + strand, within AO356_19295at 4328.724 kb on + strand, within AO356_19295at 4328.724 kb on + strand, within AO356_19295at 4328.724 kb on + strand, within AO356_19295at 4328.724 kb on + strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.725 kb on - strand, within AO356_19295at 4328.766 kb on + strand, within AO356_19295at 4328.766 kb on + strand, within AO356_19295at 4328.766 kb on + strand, within AO356_19295at 4328.767 kb on - strand, within AO356_19295at 4328.767 kb on - strand, within AO356_19295at 4328.838 kb on + strand, within AO356_19295at 4328.952 kb on + strand, within AO356_19295at 4328.952 kb on + strand, within AO356_19295at 4328.952 kb on + strand, within AO356_19295at 4328.953 kb on - strand, within AO356_19295at 4328.953 kb on - strand, within AO356_19295at 4328.953 kb on - strand, within AO356_19295at 4328.953 kb on - strand, within AO356_19295at 4328.953 kb on - strand, within AO356_19295at 4328.953 kb on - strand, within AO356_19295at 4329.091 kb on + strand, within AO356_19295at 4329.092 kb on - strand, within AO356_19295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
remove
4,326,328 + AO356_19265 0.75 -1.1
4,326,435 + AO356_19265 0.86 -0.5
4,326,435 + AO356_19265 0.86 -0.6
4,326,436 - AO356_19265 0.87 +0.0
4,326,534 + -0.2
4,326,535 - -1.0
4,326,538 + -0.3
4,326,538 + -1.2
4,326,538 + +0.8
4,326,538 + +0.0
4,326,538 + -0.8
4,326,538 + -2.0
4,326,538 + -1.0
4,326,538 + +0.0
4,326,538 + -1.7
4,326,538 + -0.5
4,326,538 + -0.4
4,326,539 - -0.4
4,326,539 - -1.0
4,326,539 - -0.5
4,326,539 - +0.6
4,326,539 - -1.2
4,326,539 - -0.2
4,326,539 - -1.1
4,326,579 + +0.0
4,326,580 - +0.2
4,326,580 - -0.8
4,326,580 - +0.7
4,326,594 + +0.0
4,326,613 + -1.6
4,326,660 + -1.0
4,326,693 + +1.3
4,326,892 + +0.0
4,327,010 + +0.4
4,327,010 + +0.1
4,327,073 - AO356_19280 0.11 -1.2
4,327,154 - +0.0
4,327,166 - AO356_19285 0.10 +1.1
4,327,329 - -0.5
4,327,373 + -0.7
4,327,373 + +1.9
4,327,374 - +0.8
4,327,374 - +0.8
4,327,374 - +0.0
4,327,574 + AO356_19290 0.22 +0.3
4,327,574 + AO356_19290 0.22 -1.2
4,327,574 + AO356_19290 0.22 +0.7
4,327,574 + AO356_19290 0.22 -1.5
4,327,574 + AO356_19290 0.22 +1.1
4,327,574 + AO356_19290 0.22 +0.3
4,327,574 + AO356_19290 0.22 -0.6
4,327,575 - AO356_19290 0.22 -0.2
4,327,575 - AO356_19290 0.22 +0.0
4,327,575 - AO356_19290 0.22 +0.5
4,327,575 - AO356_19290 0.22 +0.3
4,327,575 - AO356_19290 0.22 +1.3
4,327,575 - AO356_19290 0.22 +1.4
4,327,575 - AO356_19290 0.22 +0.7
4,327,575 - AO356_19290 0.22 +1.0
4,327,636 + AO356_19290 0.27 -0.6
4,327,698 + AO356_19290 0.33 +0.1
4,327,698 + AO356_19290 0.33 -0.1
4,327,700 + AO356_19290 0.33 -0.4
4,327,700 + AO356_19290 0.33 +0.4
4,327,700 + AO356_19290 0.33 +0.9
4,327,700 + AO356_19290 0.33 +0.4
4,327,700 + AO356_19290 0.33 +0.9
4,327,700 + AO356_19290 0.33 +0.7
4,327,700 + AO356_19290 0.33 +0.6
4,327,700 + AO356_19290 0.33 -0.3
4,327,701 - AO356_19290 0.33 +0.0
4,327,701 - AO356_19290 0.33 +0.2
4,327,701 - AO356_19290 0.33 +0.0
4,327,701 - AO356_19290 0.33 -0.8
4,327,701 - AO356_19290 0.33 -0.7
4,327,701 - AO356_19290 0.33 -0.3
4,327,701 - AO356_19290 0.33 +0.5
4,327,701 - AO356_19290 0.33 +0.4
4,327,701 - AO356_19290 0.33 +0.1
4,327,701 - AO356_19290 0.33 -0.1
4,327,701 - AO356_19290 0.33 -0.3
4,327,763 + AO356_19290 0.38 -0.3
4,327,781 + AO356_19290 0.40 +1.2
4,327,781 + AO356_19290 0.40 -0.1
4,327,782 - AO356_19290 0.40 +1.3
4,327,928 + AO356_19290 0.53 +0.7
4,328,235 - AO356_19290 0.80 +1.0
4,328,478 - -0.4
4,328,478 - +0.0
4,328,496 + -2.3
4,328,496 + -0.6
4,328,496 + -0.2
4,328,496 + -1.0
4,328,497 - +1.7
4,328,497 - +0.3
4,328,497 - -0.6
4,328,497 - +0.2
4,328,535 + +0.0
4,328,535 + -0.6
4,328,536 - +0.2
4,328,656 + -0.7
4,328,657 - -0.6
4,328,657 - -0.7
4,328,657 - +0.4
4,328,706 + AO356_19295 0.12 -1.7
4,328,707 - AO356_19295 0.12 +0.2
4,328,722 + AO356_19295 0.13 -0.4
4,328,723 - AO356_19295 0.13 -1.2
4,328,724 + AO356_19295 0.13 +0.7
4,328,724 + AO356_19295 0.13 -0.1
4,328,724 + AO356_19295 0.13 +0.3
4,328,724 + AO356_19295 0.13 +0.3
4,328,724 + AO356_19295 0.13 -0.5
4,328,724 + AO356_19295 0.13 -1.0
4,328,724 + AO356_19295 0.13 +0.0
4,328,725 - AO356_19295 0.13 +0.6
4,328,725 - AO356_19295 0.13 -0.5
4,328,725 - AO356_19295 0.13 -1.1
4,328,725 - AO356_19295 0.13 +1.0
4,328,725 - AO356_19295 0.13 -0.6
4,328,725 - AO356_19295 0.13 -0.4
4,328,725 - AO356_19295 0.13 +0.1
4,328,725 - AO356_19295 0.13 +0.6
4,328,725 - AO356_19295 0.13 -0.9
4,328,725 - AO356_19295 0.13 +0.3
4,328,725 - AO356_19295 0.13 +0.4
4,328,766 + AO356_19295 0.15 +0.4
4,328,766 + AO356_19295 0.15 -1.3
4,328,766 + AO356_19295 0.15 +1.2
4,328,767 - AO356_19295 0.15 -0.3
4,328,767 - AO356_19295 0.15 +0.3
4,328,838 + AO356_19295 0.19 -0.2
4,328,952 + AO356_19295 0.25 +0.4
4,328,952 + AO356_19295 0.25 +1.0
4,328,952 + AO356_19295 0.25 +1.7
4,328,953 - AO356_19295 0.25 -1.0
4,328,953 - AO356_19295 0.25 -2.0
4,328,953 - AO356_19295 0.25 +0.0
4,328,953 - AO356_19295 0.25 +0.3
4,328,953 - AO356_19295 0.25 -1.2
4,328,953 - AO356_19295 0.25 +0.0
4,329,091 + AO356_19295 0.33 -0.7
4,329,092 - AO356_19295 0.33 -0.4

Or see this region's nucleotide sequence