Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16610

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16605 and AO356_16610 are separated by 205 nucleotidesAO356_16610 and AO356_16615 are separated by 115 nucleotidesAO356_16615 and AO356_16620 are separated by 367 nucleotides AO356_16605: AO356_16605 - hypothetical protein, at 3,748,707 to 3,748,940 _16605 AO356_16610: AO356_16610 - hypothetical protein, at 3,749,146 to 3,749,730 _16610 AO356_16615: AO356_16615 - hypothetical protein, at 3,749,846 to 3,750,052 _16615 AO356_16620: AO356_16620 - hypothetical protein, at 3,750,420 to 3,750,701 _16620 Position (kb) 3749 3750Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3748.147 kb on + strandat 3748.148 kb on - strandat 3748.172 kb on + strandat 3748.278 kb on - strandat 3748.278 kb on - strandat 3748.432 kb on + strandat 3748.432 kb on + strandat 3748.432 kb on + strandat 3748.432 kb on + strandat 3748.432 kb on + strandat 3748.433 kb on - strandat 3748.433 kb on - strandat 3748.433 kb on - strandat 3748.433 kb on - strandat 3748.433 kb on - strandat 3748.433 kb on - strandat 3748.474 kb on + strandat 3748.474 kb on + strandat 3748.474 kb on + strandat 3748.475 kb on - strandat 3748.475 kb on - strandat 3748.587 kb on + strandat 3748.633 kb on + strandat 3748.633 kb on + strandat 3748.633 kb on + strandat 3748.633 kb on + strandat 3748.634 kb on - strandat 3748.634 kb on - strandat 3748.635 kb on + strandat 3748.636 kb on - strandat 3748.652 kb on + strandat 3748.653 kb on - strandat 3748.653 kb on - strandat 3748.693 kb on + strandat 3748.693 kb on + strandat 3748.693 kb on + strandat 3748.693 kb on + strandat 3748.694 kb on - strandat 3748.694 kb on - strandat 3748.694 kb on - strandat 3748.696 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.002 kb on + strandat 3749.003 kb on - strandat 3749.003 kb on - strandat 3749.003 kb on - strandat 3749.003 kb on - strandat 3749.003 kb on - strandat 3749.003 kb on - strandat 3749.003 kb on - strandat 3749.063 kb on + strandat 3749.063 kb on + strandat 3749.080 kb on + strandat 3749.080 kb on + strandat 3749.081 kb on - strandat 3749.081 kb on - strandat 3749.081 kb on - strandat 3749.104 kb on + strandat 3749.106 kb on + strandat 3749.106 kb on + strandat 3749.106 kb on + strandat 3749.107 kb on - strandat 3749.107 kb on - strandat 3749.226 kb on + strand, within AO356_16610at 3749.494 kb on + strand, within AO356_16610at 3749.494 kb on + strand, within AO356_16610at 3749.494 kb on + strand, within AO356_16610at 3749.494 kb on + strand, within AO356_16610at 3749.494 kb on + strand, within AO356_16610at 3749.495 kb on - strand, within AO356_16610at 3749.495 kb on - strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.518 kb on + strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.519 kb on - strand, within AO356_16610at 3749.581 kb on + strand, within AO356_16610at 3749.666 kb on + strand, within AO356_16610at 3749.666 kb on + strand, within AO356_16610at 3749.666 kb on + strand, within AO356_16610at 3749.666 kb on + strand, within AO356_16610at 3749.667 kb on - strand, within AO356_16610at 3749.667 kb on - strand, within AO356_16610at 3749.667 kb on - strand, within AO356_16610at 3749.728 kb on + strandat 3749.729 kb on - strandat 3749.729 kb on - strandat 3749.735 kb on + strandat 3749.735 kb on + strandat 3749.735 kb on + strandat 3749.736 kb on - strandat 3749.736 kb on - strandat 3749.736 kb on - strandat 3749.862 kb on + strandat 3749.940 kb on + strand, within AO356_16615at 3749.940 kb on + strand, within AO356_16615at 3749.941 kb on - strand, within AO356_16615at 3749.941 kb on - strand, within AO356_16615at 3750.021 kb on + strand, within AO356_16615at 3750.021 kb on + strand, within AO356_16615at 3750.021 kb on + strand, within AO356_16615at 3750.022 kb on - strand, within AO356_16615at 3750.022 kb on - strand, within AO356_16615at 3750.092 kb on + strandat 3750.092 kb on + strandat 3750.092 kb on + strandat 3750.093 kb on - strandat 3750.093 kb on - strandat 3750.196 kb on + strandat 3750.264 kb on + strandat 3750.264 kb on + strandat 3750.264 kb on + strandat 3750.264 kb on + strandat 3750.264 kb on + strandat 3750.265 kb on - strandat 3750.265 kb on - strandat 3750.265 kb on - strandat 3750.371 kb on + strandat 3750.372 kb on - strandat 3750.372 kb on - strandat 3750.511 kb on + strand, within AO356_16620at 3750.690 kb on - strandat 3750.707 kb on + strandat 3750.707 kb on + strandat 3750.707 kb on + strandat 3750.707 kb on + strandat 3750.707 kb on + strandat 3750.707 kb on + strandat 3750.707 kb on + strandat 3750.707 kb on + strandat 3750.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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3,748,147 + -1.0
3,748,148 - -0.4
3,748,172 + -0.9
3,748,278 - +0.6
3,748,278 - +1.0
3,748,432 + -1.0
3,748,432 + +0.1
3,748,432 + +1.1
3,748,432 + -0.9
3,748,432 + -0.3
3,748,433 - -0.3
3,748,433 - +0.0
3,748,433 - +0.5
3,748,433 - -1.6
3,748,433 - -0.6
3,748,433 - -0.1
3,748,474 + -0.7
3,748,474 + +0.4
3,748,474 + -0.9
3,748,475 - +0.7
3,748,475 - -1.7
3,748,587 + +0.1
3,748,633 + +0.3
3,748,633 + -0.4
3,748,633 + -1.4
3,748,633 + -1.4
3,748,634 - -0.3
3,748,634 - -0.6
3,748,635 + -1.7
3,748,636 - -0.5
3,748,652 + -0.0
3,748,653 - +0.4
3,748,653 - +0.9
3,748,693 + -0.7
3,748,693 + -0.7
3,748,693 + +0.2
3,748,693 + -0.5
3,748,694 - +0.1
3,748,694 - +0.4
3,748,694 - +0.4
3,748,696 + -0.1
3,749,002 + -0.3
3,749,002 + +1.6
3,749,002 + -0.4
3,749,002 + +0.0
3,749,002 + -0.3
3,749,002 + -0.4
3,749,002 + +1.7
3,749,002 + -1.4
3,749,002 + +0.5
3,749,002 + +0.6
3,749,002 + -0.2
3,749,002 + +0.1
3,749,002 + +0.6
3,749,002 + -0.1
3,749,003 - -1.1
3,749,003 - +1.0
3,749,003 - +0.4
3,749,003 - +1.3
3,749,003 - +0.0
3,749,003 - +0.1
3,749,003 - -0.3
3,749,063 + -0.4
3,749,063 + -0.2
3,749,080 + -0.5
3,749,080 + +0.1
3,749,081 - -0.4
3,749,081 - -1.2
3,749,081 - -0.9
3,749,104 + -2.7
3,749,106 + -0.5
3,749,106 + +1.1
3,749,106 + +1.7
3,749,107 - -1.9
3,749,107 - -1.3
3,749,226 + AO356_16610 0.14 -2.3
3,749,494 + AO356_16610 0.59 -1.3
3,749,494 + AO356_16610 0.59 +0.1
3,749,494 + AO356_16610 0.59 -1.0
3,749,494 + AO356_16610 0.59 -1.0
3,749,494 + AO356_16610 0.59 -1.9
3,749,495 - AO356_16610 0.60 +0.2
3,749,495 - AO356_16610 0.60 +0.1
3,749,518 + AO356_16610 0.64 +0.1
3,749,518 + AO356_16610 0.64 -0.9
3,749,518 + AO356_16610 0.64 -2.0
3,749,518 + AO356_16610 0.64 -1.4
3,749,518 + AO356_16610 0.64 -0.3
3,749,518 + AO356_16610 0.64 -1.4
3,749,518 + AO356_16610 0.64 -2.4
3,749,518 + AO356_16610 0.64 -1.2
3,749,518 + AO356_16610 0.64 -2.4
3,749,518 + AO356_16610 0.64 +0.1
3,749,519 - AO356_16610 0.64 -1.9
3,749,519 - AO356_16610 0.64 -1.3
3,749,519 - AO356_16610 0.64 -1.6
3,749,519 - AO356_16610 0.64 -0.4
3,749,519 - AO356_16610 0.64 -1.1
3,749,519 - AO356_16610 0.64 +1.1
3,749,519 - AO356_16610 0.64 -0.4
3,749,519 - AO356_16610 0.64 -2.1
3,749,519 - AO356_16610 0.64 -2.8
3,749,519 - AO356_16610 0.64 -2.6
3,749,519 - AO356_16610 0.64 -0.9
3,749,519 - AO356_16610 0.64 -1.9
3,749,581 + AO356_16610 0.74 -0.1
3,749,666 + AO356_16610 0.89 -0.9
3,749,666 + AO356_16610 0.89 -0.8
3,749,666 + AO356_16610 0.89 -2.2
3,749,666 + AO356_16610 0.89 -0.7
3,749,667 - AO356_16610 0.89 -0.0
3,749,667 - AO356_16610 0.89 -1.2
3,749,667 - AO356_16610 0.89 -1.4
3,749,728 + +0.6
3,749,729 - +0.1
3,749,729 - -0.6
3,749,735 + -1.1
3,749,735 + -0.4
3,749,735 + +0.1
3,749,736 - -1.0
3,749,736 - -0.6
3,749,736 - -0.3
3,749,862 + +0.6
3,749,940 + AO356_16615 0.45 +1.7
3,749,940 + AO356_16615 0.45 +0.7
3,749,941 - AO356_16615 0.46 +2.5
3,749,941 - AO356_16615 0.46 +0.7
3,750,021 + AO356_16615 0.85 -0.9
3,750,021 + AO356_16615 0.85 +0.2
3,750,021 + AO356_16615 0.85 -1.6
3,750,022 - AO356_16615 0.85 +0.5
3,750,022 - AO356_16615 0.85 +1.1
3,750,092 + -0.7
3,750,092 + +0.1
3,750,092 + -1.4
3,750,093 - -0.5
3,750,093 - -0.9
3,750,196 + +0.7
3,750,264 + -0.3
3,750,264 + +0.9
3,750,264 + +1.7
3,750,264 + +0.1
3,750,264 + -0.7
3,750,265 - -1.9
3,750,265 - +0.7
3,750,265 - -0.3
3,750,371 + +0.5
3,750,372 - +0.3
3,750,372 - +0.1
3,750,511 + AO356_16620 0.32 -0.6
3,750,690 - +1.7
3,750,707 + +0.1
3,750,707 + -0.6
3,750,707 + -0.2
3,750,707 + -0.6
3,750,707 + +0.6
3,750,707 + -0.0
3,750,707 + +1.0
3,750,707 + -0.1
3,750,708 - -0.3

Or see this region's nucleotide sequence