Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10515

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10510 and AO356_10515 overlap by 20 nucleotidesAO356_10515 and AO356_10520 are separated by 9 nucleotides AO356_10510: AO356_10510 - hypothetical protein, at 2,375,325 to 2,376,014 _10510 AO356_10515: AO356_10515 - alpha/beta hydrolase, at 2,375,995 to 2,378,445 _10515 AO356_10520: AO356_10520 - NAD-dependent dehydratase, at 2,378,455 to 2,379,897 _10520 Position (kb) 2375 2376 2377 2378 2379Strain fitness (log2 ratio) -2 -1 0 1 2at 2374.996 kb on + strandat 2374.996 kb on + strandat 2375.054 kb on + strandat 2375.054 kb on + strandat 2375.054 kb on + strandat 2375.054 kb on + strandat 2375.054 kb on + strandat 2375.054 kb on + strandat 2375.055 kb on - strandat 2375.055 kb on - strandat 2375.055 kb on - strandat 2375.055 kb on - strandat 2375.055 kb on - strandat 2375.102 kb on - strandat 2375.183 kb on + strandat 2375.183 kb on + strandat 2375.184 kb on - strandat 2375.184 kb on - strandat 2375.184 kb on - strandat 2375.184 kb on - strandat 2375.184 kb on - strandat 2375.187 kb on + strandat 2375.187 kb on + strandat 2375.187 kb on + strandat 2375.187 kb on + strandat 2375.187 kb on + strandat 2375.187 kb on + strandat 2375.187 kb on + strandat 2375.188 kb on - strandat 2375.188 kb on - strandat 2375.188 kb on - strandat 2375.202 kb on + strandat 2375.202 kb on + strandat 2375.202 kb on + strandat 2375.202 kb on + strandat 2375.202 kb on + strandat 2375.202 kb on + strandat 2375.220 kb on - strandat 2375.246 kb on - strandat 2375.246 kb on - strandat 2375.257 kb on - strandat 2375.257 kb on - strandat 2375.257 kb on - strandat 2375.257 kb on - strandat 2375.257 kb on - strandat 2375.257 kb on - strandat 2375.352 kb on + strandat 2375.352 kb on + strandat 2375.353 kb on - strandat 2375.353 kb on - strandat 2375.353 kb on - strandat 2375.364 kb on + strandat 2375.413 kb on + strand, within AO356_10510at 2375.413 kb on + strand, within AO356_10510at 2375.413 kb on + strand, within AO356_10510at 2375.413 kb on + strand, within AO356_10510at 2375.413 kb on + strand, within AO356_10510at 2375.414 kb on - strand, within AO356_10510at 2375.414 kb on - strand, within AO356_10510at 2375.414 kb on - strand, within AO356_10510at 2375.414 kb on - strand, within AO356_10510at 2375.414 kb on - strand, within AO356_10510at 2375.414 kb on - strand, within AO356_10510at 2375.425 kb on + strand, within AO356_10510at 2375.425 kb on + strand, within AO356_10510at 2375.425 kb on + strand, within AO356_10510at 2375.426 kb on - strand, within AO356_10510at 2375.426 kb on - strand, within AO356_10510at 2375.426 kb on - strand, within AO356_10510at 2375.426 kb on - strand, within AO356_10510at 2375.469 kb on + strand, within AO356_10510at 2375.470 kb on - strand, within AO356_10510at 2375.538 kb on + strand, within AO356_10510at 2375.538 kb on + strand, within AO356_10510at 2375.539 kb on - strand, within AO356_10510at 2375.539 kb on - strand, within AO356_10510at 2375.539 kb on - strand, within AO356_10510at 2375.539 kb on - strand, within AO356_10510at 2375.539 kb on - strand, within AO356_10510at 2375.539 kb on - strand, within AO356_10510at 2375.572 kb on + strand, within AO356_10510at 2375.572 kb on + strand, within AO356_10510at 2375.572 kb on + strand, within AO356_10510at 2375.573 kb on - strand, within AO356_10510at 2375.660 kb on + strand, within AO356_10510at 2375.696 kb on + strand, within AO356_10510at 2375.696 kb on + strand, within AO356_10510at 2375.696 kb on + strand, within AO356_10510at 2375.697 kb on - strand, within AO356_10510at 2375.697 kb on - strand, within AO356_10510at 2375.697 kb on - strand, within AO356_10510at 2375.712 kb on + strand, within AO356_10510at 2375.712 kb on + strand, within AO356_10510at 2375.712 kb on + strand, within AO356_10510at 2375.712 kb on + strand, within AO356_10510at 2375.713 kb on - strand, within AO356_10510at 2375.713 kb on - strand, within AO356_10510at 2375.713 kb on - strand, within AO356_10510at 2375.713 kb on - strand, within AO356_10510at 2375.713 kb on - strand, within AO356_10510at 2375.713 kb on - strand, within AO356_10510at 2375.756 kb on + strand, within AO356_10510at 2375.813 kb on + strand, within AO356_10510at 2375.813 kb on + strand, within AO356_10510at 2375.826 kb on + strand, within AO356_10510at 2375.827 kb on - strand, within AO356_10510at 2375.827 kb on - strand, within AO356_10510at 2375.851 kb on + strand, within AO356_10510at 2375.851 kb on + strand, within AO356_10510at 2375.851 kb on + strand, within AO356_10510at 2375.851 kb on + strand, within AO356_10510at 2375.851 kb on + strand, within AO356_10510at 2375.851 kb on + strand, within AO356_10510at 2375.851 kb on + strand, within AO356_10510at 2375.851 kb on + strand, within AO356_10510at 2375.852 kb on - strand, within AO356_10510at 2375.852 kb on - strand, within AO356_10510at 2375.852 kb on - strand, within AO356_10510at 2375.874 kb on - strand, within AO356_10510at 2375.896 kb on + strand, within AO356_10510at 2375.897 kb on - strand, within AO356_10510at 2376.006 kb on + strandat 2376.006 kb on + strandat 2376.006 kb on + strandat 2376.006 kb on + strandat 2376.012 kb on + strandat 2376.012 kb on + strandat 2376.012 kb on + strandat 2376.013 kb on - strandat 2376.176 kb on + strandat 2376.176 kb on + strandat 2376.176 kb on + strandat 2376.177 kb on - strandat 2376.254 kb on + strand, within AO356_10515at 2376.255 kb on - strand, within AO356_10515at 2376.437 kb on + strand, within AO356_10515at 2376.438 kb on - strand, within AO356_10515at 2376.438 kb on - strand, within AO356_10515at 2376.440 kb on + strand, within AO356_10515at 2376.440 kb on + strand, within AO356_10515at 2376.440 kb on + strand, within AO356_10515at 2376.440 kb on + strand, within AO356_10515at 2376.440 kb on + strand, within AO356_10515at 2376.441 kb on - strand, within AO356_10515at 2376.441 kb on - strand, within AO356_10515at 2376.597 kb on - strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.683 kb on + strand, within AO356_10515at 2376.684 kb on - strand, within AO356_10515at 2376.684 kb on - strand, within AO356_10515at 2376.684 kb on - strand, within AO356_10515at 2376.684 kb on - strand, within AO356_10515at 2376.684 kb on - strand, within AO356_10515at 2376.896 kb on + strand, within AO356_10515at 2376.897 kb on - strand, within AO356_10515at 2376.897 kb on - strand, within AO356_10515at 2376.956 kb on + strand, within AO356_10515at 2376.956 kb on + strand, within AO356_10515at 2376.956 kb on + strand, within AO356_10515at 2376.956 kb on + strand, within AO356_10515at 2376.956 kb on + strand, within AO356_10515at 2376.957 kb on - strand, within AO356_10515at 2376.957 kb on - strand, within AO356_10515at 2377.064 kb on + strand, within AO356_10515at 2377.064 kb on + strand, within AO356_10515at 2377.064 kb on + strand, within AO356_10515at 2377.064 kb on + strand, within AO356_10515at 2377.064 kb on + strand, within AO356_10515at 2377.064 kb on + strand, within AO356_10515at 2377.065 kb on - strand, within AO356_10515at 2377.139 kb on + strand, within AO356_10515at 2377.140 kb on - strand, within AO356_10515at 2377.214 kb on + strand, within AO356_10515at 2377.214 kb on + strand, within AO356_10515at 2377.214 kb on + strand, within AO356_10515at 2377.215 kb on - strand, within AO356_10515at 2377.215 kb on - strand, within AO356_10515at 2377.215 kb on - strand, within AO356_10515at 2377.399 kb on + strand, within AO356_10515at 2377.399 kb on + strand, within AO356_10515at 2377.399 kb on + strand, within AO356_10515at 2377.400 kb on - strand, within AO356_10515at 2377.400 kb on - strand, within AO356_10515at 2377.400 kb on - strand, within AO356_10515at 2377.600 kb on - strand, within AO356_10515at 2377.600 kb on - strand, within AO356_10515at 2377.600 kb on - strand, within AO356_10515at 2377.600 kb on - strand, within AO356_10515at 2377.630 kb on + strand, within AO356_10515at 2377.630 kb on + strand, within AO356_10515at 2377.630 kb on + strand, within AO356_10515at 2377.790 kb on + strand, within AO356_10515at 2378.015 kb on + strand, within AO356_10515at 2378.015 kb on + strand, within AO356_10515at 2378.070 kb on + strand, within AO356_10515at 2378.071 kb on - strand, within AO356_10515at 2378.289 kb on - strandat 2378.289 kb on - strandat 2378.289 kb on - strandat 2378.407 kb on - strandat 2378.426 kb on + strandat 2378.426 kb on + strandat 2378.427 kb on - strandat 2378.427 kb on - strandat 2378.427 kb on - strandat 2378.427 kb on - strandat 2378.687 kb on + strand, within AO356_10520at 2378.687 kb on + strand, within AO356_10520at 2378.687 kb on + strand, within AO356_10520at 2378.687 kb on + strand, within AO356_10520at 2378.687 kb on + strand, within AO356_10520at 2378.688 kb on - strand, within AO356_10520at 2378.688 kb on - strand, within AO356_10520at 2378.688 kb on - strand, within AO356_10520at 2378.688 kb on - strand, within AO356_10520at 2378.688 kb on - strand, within AO356_10520at 2378.688 kb on - strand, within AO356_10520at 2378.688 kb on - strand, within AO356_10520at 2378.996 kb on + strand, within AO356_10520at 2378.997 kb on - strand, within AO356_10520at 2379.036 kb on + strand, within AO356_10520at 2379.078 kb on + strand, within AO356_10520at 2379.079 kb on - strand, within AO356_10520at 2379.234 kb on - strand, within AO356_10520at 2379.234 kb on - strand, within AO356_10520at 2379.348 kb on + strand, within AO356_10520at 2379.348 kb on + strand, within AO356_10520at 2379.348 kb on + strand, within AO356_10520at 2379.349 kb on - strand, within AO356_10520at 2379.349 kb on - strand, within AO356_10520at 2379.349 kb on - strand, within AO356_10520at 2379.350 kb on + strand, within AO356_10520at 2379.350 kb on + strand, within AO356_10520at 2379.350 kb on + strand, within AO356_10520at 2379.350 kb on + strand, within AO356_10520at 2379.350 kb on + strand, within AO356_10520at 2379.350 kb on + strand, within AO356_10520at 2379.350 kb on + strand, within AO356_10520at 2379.351 kb on - strand, within AO356_10520at 2379.351 kb on - strand, within AO356_10520at 2379.351 kb on - strand, within AO356_10520at 2379.351 kb on - strand, within AO356_10520at 2379.351 kb on - strand, within AO356_10520at 2379.351 kb on - strand, within AO356_10520at 2379.351 kb on - strand, within AO356_10520

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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2,374,996 + +0.3
2,374,996 + -1.0
2,375,054 + -0.2
2,375,054 + +0.5
2,375,054 + -1.5
2,375,054 + +0.1
2,375,054 + +0.1
2,375,054 + +1.0
2,375,055 - +0.2
2,375,055 - +0.5
2,375,055 - -1.2
2,375,055 - -0.6
2,375,055 - +0.3
2,375,102 - -0.6
2,375,183 + -0.2
2,375,183 + +0.3
2,375,184 - -0.5
2,375,184 - +0.3
2,375,184 - +0.3
2,375,184 - -0.7
2,375,184 - -0.2
2,375,187 + -0.3
2,375,187 + -0.5
2,375,187 + +0.9
2,375,187 + +0.3
2,375,187 + -0.2
2,375,187 + -0.1
2,375,187 + -1.1
2,375,188 - +0.4
2,375,188 - +0.3
2,375,188 - +0.3
2,375,202 + -1.2
2,375,202 + -2.2
2,375,202 + -1.3
2,375,202 + +0.5
2,375,202 + -0.3
2,375,202 + -0.5
2,375,220 - -1.1
2,375,246 - +1.3
2,375,246 - +0.9
2,375,257 - -1.1
2,375,257 - -0.1
2,375,257 - -0.7
2,375,257 - -0.7
2,375,257 - -0.3
2,375,257 - -0.7
2,375,352 + -0.7
2,375,352 + -1.7
2,375,353 - +1.0
2,375,353 - -0.8
2,375,353 - +0.3
2,375,364 + +0.7
2,375,413 + AO356_10510 0.13 +1.3
2,375,413 + AO356_10510 0.13 +0.7
2,375,413 + AO356_10510 0.13 +0.8
2,375,413 + AO356_10510 0.13 -0.7
2,375,413 + AO356_10510 0.13 -2.1
2,375,414 - AO356_10510 0.13 +1.1
2,375,414 - AO356_10510 0.13 -1.2
2,375,414 - AO356_10510 0.13 +1.3
2,375,414 - AO356_10510 0.13 -0.1
2,375,414 - AO356_10510 0.13 -0.9
2,375,414 - AO356_10510 0.13 -0.0
2,375,425 + AO356_10510 0.14 -2.3
2,375,425 + AO356_10510 0.14 +0.4
2,375,425 + AO356_10510 0.14 -0.3
2,375,426 - AO356_10510 0.15 +0.8
2,375,426 - AO356_10510 0.15 +0.0
2,375,426 - AO356_10510 0.15 +1.3
2,375,426 - AO356_10510 0.15 +0.7
2,375,469 + AO356_10510 0.21 -0.0
2,375,470 - AO356_10510 0.21 +1.0
2,375,538 + AO356_10510 0.31 +0.0
2,375,538 + AO356_10510 0.31 +0.4
2,375,539 - AO356_10510 0.31 +0.3
2,375,539 - AO356_10510 0.31 +0.7
2,375,539 - AO356_10510 0.31 +1.1
2,375,539 - AO356_10510 0.31 -0.7
2,375,539 - AO356_10510 0.31 -1.7
2,375,539 - AO356_10510 0.31 +0.3
2,375,572 + AO356_10510 0.36 +0.4
2,375,572 + AO356_10510 0.36 +1.2
2,375,572 + AO356_10510 0.36 +1.1
2,375,573 - AO356_10510 0.36 +0.8
2,375,660 + AO356_10510 0.49 -1.2
2,375,696 + AO356_10510 0.54 +0.0
2,375,696 + AO356_10510 0.54 +0.3
2,375,696 + AO356_10510 0.54 +1.3
2,375,697 - AO356_10510 0.54 +0.0
2,375,697 - AO356_10510 0.54 -0.1
2,375,697 - AO356_10510 0.54 +0.6
2,375,712 + AO356_10510 0.56 +1.2
2,375,712 + AO356_10510 0.56 -0.0
2,375,712 + AO356_10510 0.56 -0.1
2,375,712 + AO356_10510 0.56 +0.7
2,375,713 - AO356_10510 0.56 -0.2
2,375,713 - AO356_10510 0.56 +0.7
2,375,713 - AO356_10510 0.56 -0.7
2,375,713 - AO356_10510 0.56 -0.1
2,375,713 - AO356_10510 0.56 -1.2
2,375,713 - AO356_10510 0.56 -1.3
2,375,756 + AO356_10510 0.62 -0.3
2,375,813 + AO356_10510 0.71 -0.4
2,375,813 + AO356_10510 0.71 +0.4
2,375,826 + AO356_10510 0.73 +2.3
2,375,827 - AO356_10510 0.73 -1.1
2,375,827 - AO356_10510 0.73 -0.1
2,375,851 + AO356_10510 0.76 +0.3
2,375,851 + AO356_10510 0.76 -1.1
2,375,851 + AO356_10510 0.76 +0.3
2,375,851 + AO356_10510 0.76 -1.2
2,375,851 + AO356_10510 0.76 +0.3
2,375,851 + AO356_10510 0.76 +0.1
2,375,851 + AO356_10510 0.76 +0.5
2,375,851 + AO356_10510 0.76 -0.5
2,375,852 - AO356_10510 0.76 +0.5
2,375,852 - AO356_10510 0.76 +0.3
2,375,852 - AO356_10510 0.76 -0.5
2,375,874 - AO356_10510 0.80 +0.6
2,375,896 + AO356_10510 0.83 -0.5
2,375,897 - AO356_10510 0.83 +1.1
2,376,006 + -1.2
2,376,006 + +0.1
2,376,006 + -0.0
2,376,006 + +0.4
2,376,012 + +0.3
2,376,012 + +0.3
2,376,012 + +0.0
2,376,013 - -2.3
2,376,176 + +0.4
2,376,176 + +0.3
2,376,176 + +1.0
2,376,177 - +0.9
2,376,254 + AO356_10515 0.11 -0.9
2,376,255 - AO356_10515 0.11 -1.0
2,376,437 + AO356_10515 0.18 +0.2
2,376,438 - AO356_10515 0.18 -0.3
2,376,438 - AO356_10515 0.18 -0.2
2,376,440 + AO356_10515 0.18 +0.3
2,376,440 + AO356_10515 0.18 +0.1
2,376,440 + AO356_10515 0.18 +0.6
2,376,440 + AO356_10515 0.18 -0.1
2,376,440 + AO356_10515 0.18 -0.7
2,376,441 - AO356_10515 0.18 -0.6
2,376,441 - AO356_10515 0.18 +0.3
2,376,597 - AO356_10515 0.25 -2.1
2,376,683 + AO356_10515 0.28 +1.2
2,376,683 + AO356_10515 0.28 -0.7
2,376,683 + AO356_10515 0.28 -0.2
2,376,683 + AO356_10515 0.28 +2.6
2,376,683 + AO356_10515 0.28 -0.3
2,376,683 + AO356_10515 0.28 -0.4
2,376,683 + AO356_10515 0.28 +0.7
2,376,683 + AO356_10515 0.28 +0.4
2,376,683 + AO356_10515 0.28 -0.6
2,376,684 - AO356_10515 0.28 +1.0
2,376,684 - AO356_10515 0.28 -0.9
2,376,684 - AO356_10515 0.28 +1.3
2,376,684 - AO356_10515 0.28 +1.1
2,376,684 - AO356_10515 0.28 -0.6
2,376,896 + AO356_10515 0.37 +0.0
2,376,897 - AO356_10515 0.37 +1.4
2,376,897 - AO356_10515 0.37 -0.4
2,376,956 + AO356_10515 0.39 +0.0
2,376,956 + AO356_10515 0.39 -0.2
2,376,956 + AO356_10515 0.39 +0.5
2,376,956 + AO356_10515 0.39 +0.3
2,376,956 + AO356_10515 0.39 -0.3
2,376,957 - AO356_10515 0.39 +0.1
2,376,957 - AO356_10515 0.39 -0.3
2,377,064 + AO356_10515 0.44 -0.3
2,377,064 + AO356_10515 0.44 -0.0
2,377,064 + AO356_10515 0.44 -0.0
2,377,064 + AO356_10515 0.44 -0.6
2,377,064 + AO356_10515 0.44 -1.3
2,377,064 + AO356_10515 0.44 +0.8
2,377,065 - AO356_10515 0.44 +0.5
2,377,139 + AO356_10515 0.47 -0.4
2,377,140 - AO356_10515 0.47 -0.6
2,377,214 + AO356_10515 0.50 -0.7
2,377,214 + AO356_10515 0.50 -0.3
2,377,214 + AO356_10515 0.50 +0.3
2,377,215 - AO356_10515 0.50 -0.5
2,377,215 - AO356_10515 0.50 -1.1
2,377,215 - AO356_10515 0.50 +1.6
2,377,399 + AO356_10515 0.57 +0.8
2,377,399 + AO356_10515 0.57 +0.1
2,377,399 + AO356_10515 0.57 +0.5
2,377,400 - AO356_10515 0.57 +0.3
2,377,400 - AO356_10515 0.57 +1.3
2,377,400 - AO356_10515 0.57 +0.5
2,377,600 - AO356_10515 0.65 -2.3
2,377,600 - AO356_10515 0.65 -0.3
2,377,600 - AO356_10515 0.65 +1.7
2,377,600 - AO356_10515 0.65 -0.8
2,377,630 + AO356_10515 0.67 +0.3
2,377,630 + AO356_10515 0.67 -1.3
2,377,630 + AO356_10515 0.67 +1.4
2,377,790 + AO356_10515 0.73 +0.7
2,378,015 + AO356_10515 0.82 -0.4
2,378,015 + AO356_10515 0.82 +0.5
2,378,070 + AO356_10515 0.85 -1.1
2,378,071 - AO356_10515 0.85 -0.7
2,378,289 - -0.9
2,378,289 - +2.3
2,378,289 - +0.8
2,378,407 - -2.1
2,378,426 + +0.4
2,378,426 + -0.4
2,378,427 - +0.1
2,378,427 - +1.1
2,378,427 - +0.5
2,378,427 - -1.1
2,378,687 + AO356_10520 0.16 +0.3
2,378,687 + AO356_10520 0.16 -0.7
2,378,687 + AO356_10520 0.16 +0.7
2,378,687 + AO356_10520 0.16 +0.3
2,378,687 + AO356_10520 0.16 +0.3
2,378,688 - AO356_10520 0.16 -0.3
2,378,688 - AO356_10520 0.16 +0.8
2,378,688 - AO356_10520 0.16 -0.5
2,378,688 - AO356_10520 0.16 +0.3
2,378,688 - AO356_10520 0.16 +0.8
2,378,688 - AO356_10520 0.16 +0.3
2,378,688 - AO356_10520 0.16 -0.3
2,378,996 + AO356_10520 0.37 -1.1
2,378,997 - AO356_10520 0.38 -1.5
2,379,036 + AO356_10520 0.40 +0.1
2,379,078 + AO356_10520 0.43 +0.5
2,379,079 - AO356_10520 0.43 +0.3
2,379,234 - AO356_10520 0.54 -0.6
2,379,234 - AO356_10520 0.54 +0.3
2,379,348 + AO356_10520 0.62 +0.7
2,379,348 + AO356_10520 0.62 +0.3
2,379,348 + AO356_10520 0.62 +0.5
2,379,349 - AO356_10520 0.62 -0.0
2,379,349 - AO356_10520 0.62 -0.1
2,379,349 - AO356_10520 0.62 -1.1
2,379,350 + AO356_10520 0.62 +0.5
2,379,350 + AO356_10520 0.62 +1.7
2,379,350 + AO356_10520 0.62 +0.3
2,379,350 + AO356_10520 0.62 -0.3
2,379,350 + AO356_10520 0.62 +0.3
2,379,350 + AO356_10520 0.62 -0.3
2,379,350 + AO356_10520 0.62 +1.8
2,379,351 - AO356_10520 0.62 +0.0
2,379,351 - AO356_10520 0.62 +0.4
2,379,351 - AO356_10520 0.62 +0.3
2,379,351 - AO356_10520 0.62 +0.3
2,379,351 - AO356_10520 0.62 +0.8
2,379,351 - AO356_10520 0.62 -0.7
2,379,351 - AO356_10520 0.62 -1.6

Or see this region's nucleotide sequence