Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06135 and AO356_06140 are separated by 94 nucleotides AO356_06140 and AO356_06145 are separated by 125 nucleotides AO356_06145 and AO356_06150 are separated by 91 nucleotides AO356_06150 and AO356_06155 are separated by 1 nucleotides
AO356_06135: AO356_06135 - RND transporter, at 1,361,782 to 1,362,882
_06135
AO356_06140: AO356_06140 - TetR family transcriptional regulator, at 1,362,977 to 1,363,612
_06140
AO356_06145: AO356_06145 - SAM-dependent methyltransferase, at 1,363,738 to 1,364,520
_06145
AO356_06150: AO356_06150 - energy transducer TonB, at 1,364,612 to 1,365,232
_06150
AO356_06155: AO356_06155 - extensin, at 1,365,234 to 1,365,932
_06155
Position (kb)
1363
1364
1365 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1362.738 kb on - strand, within AO356_06135 at 1362.738 kb on - strand, within AO356_06135 at 1362.738 kb on - strand, within AO356_06135 at 1362.832 kb on + strand at 1362.915 kb on + strand at 1362.920 kb on - strand at 1362.920 kb on - strand at 1362.931 kb on + strand at 1362.931 kb on + strand at 1362.932 kb on - strand at 1362.932 kb on - strand at 1362.932 kb on - strand at 1362.936 kb on + strand at 1362.936 kb on + strand at 1362.937 kb on - strand at 1362.937 kb on - strand at 1362.939 kb on + strand at 1362.939 kb on + strand at 1362.939 kb on + strand at 1362.943 kb on - strand at 1362.965 kb on + strand at 1362.965 kb on + strand at 1363.082 kb on + strand, within AO356_06140 at 1363.083 kb on - strand, within AO356_06140 at 1363.091 kb on - strand, within AO356_06140 at 1363.129 kb on + strand, within AO356_06140 at 1363.142 kb on + strand, within AO356_06140 at 1363.142 kb on + strand, within AO356_06140 at 1363.142 kb on + strand, within AO356_06140 at 1363.142 kb on + strand, within AO356_06140 at 1363.142 kb on + strand, within AO356_06140 at 1363.142 kb on + strand, within AO356_06140 at 1363.143 kb on - strand, within AO356_06140 at 1363.143 kb on - strand, within AO356_06140 at 1363.143 kb on - strand, within AO356_06140 at 1363.143 kb on - strand, within AO356_06140 at 1363.143 kb on - strand, within AO356_06140 at 1363.143 kb on - strand, within AO356_06140 at 1363.143 kb on - strand, within AO356_06140 at 1363.143 kb on - strand, within AO356_06140 at 1363.223 kb on + strand, within AO356_06140 at 1363.223 kb on + strand, within AO356_06140 at 1363.224 kb on - strand, within AO356_06140 at 1363.763 kb on + strand at 1363.763 kb on + strand at 1363.763 kb on + strand at 1363.773 kb on - strand at 1363.991 kb on + strand, within AO356_06145 at 1363.991 kb on + strand, within AO356_06145 at 1363.992 kb on - strand, within AO356_06145 at 1363.992 kb on - strand, within AO356_06145 at 1363.992 kb on - strand, within AO356_06145 at 1363.992 kb on - strand, within AO356_06145 at 1363.992 kb on - strand, within AO356_06145 at 1364.663 kb on + strand at 1364.663 kb on + strand at 1364.663 kb on + strand at 1364.663 kb on + strand at 1364.674 kb on + strand, within AO356_06150 at 1364.675 kb on - strand, within AO356_06150 at 1364.675 kb on - strand, within AO356_06150 at 1364.675 kb on - strand, within AO356_06150 at 1364.753 kb on - strand, within AO356_06150 at 1364.774 kb on + strand, within AO356_06150 at 1364.774 kb on + strand, within AO356_06150 at 1365.295 kb on + strand at 1365.296 kb on - strand at 1365.323 kb on + strand, within AO356_06155 at 1365.488 kb on - strand, within AO356_06155 at 1365.488 kb on - strand, within AO356_06155 at 1365.488 kb on - strand, within AO356_06155 at 1365.488 kb on - strand, within AO356_06155 at 1365.488 kb on - strand, within AO356_06155 at 1365.488 kb on - strand, within AO356_06155 at 1365.488 kb on - strand, within AO356_06155
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 1,362,738 - AO356_06135 0.87 +1.7 1,362,738 - AO356_06135 0.87 +1.5 1,362,738 - AO356_06135 0.87 -0.9 1,362,832 + -0.7 1,362,915 + -0.3 1,362,920 - -0.0 1,362,920 - +2.4 1,362,931 + +0.5 1,362,931 + -0.5 1,362,932 - +0.8 1,362,932 - +0.5 1,362,932 - -0.7 1,362,936 + +0.4 1,362,936 + -0.2 1,362,937 - -0.6 1,362,937 - -0.9 1,362,939 + -0.0 1,362,939 + -0.3 1,362,939 + -2.3 1,362,943 - -0.5 1,362,965 + +1.2 1,362,965 + +0.1 1,363,082 + AO356_06140 0.17 -0.1 1,363,083 - AO356_06140 0.17 +0.1 1,363,091 - AO356_06140 0.18 +0.2 1,363,129 + AO356_06140 0.24 +0.8 1,363,142 + AO356_06140 0.26 -0.4 1,363,142 + AO356_06140 0.26 +0.9 1,363,142 + AO356_06140 0.26 +0.9 1,363,142 + AO356_06140 0.26 -0.2 1,363,142 + AO356_06140 0.26 -2.1 1,363,142 + AO356_06140 0.26 +0.2 1,363,143 - AO356_06140 0.26 -0.1 1,363,143 - AO356_06140 0.26 +1.5 1,363,143 - AO356_06140 0.26 +0.1 1,363,143 - AO356_06140 0.26 -0.5 1,363,143 - AO356_06140 0.26 +0.4 1,363,143 - AO356_06140 0.26 +0.2 1,363,143 - AO356_06140 0.26 +1.1 1,363,143 - AO356_06140 0.26 +0.7 1,363,223 + AO356_06140 0.39 -1.1 1,363,223 + AO356_06140 0.39 +1.2 1,363,224 - AO356_06140 0.39 -1.2 1,363,763 + -1.2 1,363,763 + +0.7 1,363,763 + -1.7 1,363,773 - +1.1 1,363,991 + AO356_06145 0.32 -1.2 1,363,991 + AO356_06145 0.32 -0.9 1,363,992 - AO356_06145 0.32 -0.5 1,363,992 - AO356_06145 0.32 -1.5 1,363,992 - AO356_06145 0.32 -0.4 1,363,992 - AO356_06145 0.32 -0.4 1,363,992 - AO356_06145 0.32 -1.0 1,364,663 + +1.6 1,364,663 + -1.3 1,364,663 + +0.4 1,364,663 + -1.4 1,364,674 + AO356_06150 0.10 -1.7 1,364,675 - AO356_06150 0.10 -0.3 1,364,675 - AO356_06150 0.10 +0.9 1,364,675 - AO356_06150 0.10 -0.3 1,364,753 - AO356_06150 0.23 -0.0 1,364,774 + AO356_06150 0.26 -0.9 1,364,774 + AO356_06150 0.26 +0.7 1,365,295 + +1.7 1,365,296 - -1.7 1,365,323 + AO356_06155 0.13 +0.3 1,365,488 - AO356_06155 0.36 +1.4 1,365,488 - AO356_06155 0.36 +0.2 1,365,488 - AO356_06155 0.36 +0.3 1,365,488 - AO356_06155 0.36 -0.9 1,365,488 - AO356_06155 0.36 +0.1 1,365,488 - AO356_06155 0.36 +0.1 1,365,488 - AO356_06155 0.36 -0.3
Or see this region's nucleotide sequence