Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04220 and AO356_04225 are separated by 381 nucleotides AO356_04225 and AO356_04230 are separated by 150 nucleotides AO356_04230 and AO356_04235 are separated by 50 nucleotides
AO356_04220: AO356_04220 - hypothetical protein, at 958,935 to 959,801
_04220
AO356_04225: AO356_04225 - FMN-dependent NADH-azoreductase, at 960,183 to 960,782
_04225
AO356_04230: AO356_04230 - 3-phosphoglycerate kinase, at 960,933 to 961,247
_04230
AO356_04235: AO356_04235 - LysR family transcriptional regulator, at 961,298 to 962,221
_04235
Position (kb) 960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 959.270 kb on - strand, within AO356_04220 at 959.270 kb on - strand, within AO356_04220 at 959.270 kb on - strand, within AO356_04220 at 959.275 kb on + strand, within AO356_04220 at 959.333 kb on - strand, within AO356_04220 at 959.333 kb on - strand, within AO356_04220 at 959.333 kb on - strand, within AO356_04220 at 959.333 kb on - strand, within AO356_04220 at 959.354 kb on - strand, within AO356_04220 at 959.522 kb on + strand, within AO356_04220 at 959.522 kb on + strand, within AO356_04220 at 959.523 kb on - strand, within AO356_04220 at 959.559 kb on + strand, within AO356_04220 at 959.559 kb on + strand, within AO356_04220 at 959.559 kb on + strand, within AO356_04220 at 959.560 kb on - strand, within AO356_04220 at 959.575 kb on + strand, within AO356_04220 at 959.575 kb on + strand, within AO356_04220 at 959.576 kb on - strand, within AO356_04220 at 959.587 kb on + strand, within AO356_04220 at 959.587 kb on + strand, within AO356_04220 at 959.587 kb on + strand, within AO356_04220 at 959.588 kb on - strand, within AO356_04220 at 959.588 kb on - strand, within AO356_04220 at 959.588 kb on - strand, within AO356_04220 at 959.716 kb on + strand at 959.716 kb on + strand at 959.717 kb on - strand at 959.717 kb on - strand at 959.740 kb on + strand at 959.741 kb on - strand at 959.790 kb on + strand at 959.790 kb on + strand at 959.794 kb on + strand at 959.795 kb on - strand at 959.951 kb on + strand at 959.961 kb on - strand at 959.961 kb on - strand at 959.961 kb on - strand at 959.974 kb on + strand at 960.026 kb on - strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.093 kb on + strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.094 kb on - strand at 960.149 kb on + strand at 960.150 kb on - strand at 960.150 kb on - strand at 960.150 kb on - strand at 960.316 kb on + strand, within AO356_04225 at 960.316 kb on + strand, within AO356_04225 at 960.421 kb on + strand, within AO356_04225 at 960.422 kb on - strand, within AO356_04225 at 960.422 kb on - strand, within AO356_04225 at 960.422 kb on - strand, within AO356_04225 at 960.422 kb on - strand, within AO356_04225 at 960.493 kb on + strand, within AO356_04225 at 960.493 kb on + strand, within AO356_04225 at 960.494 kb on - strand, within AO356_04225 at 960.494 kb on - strand, within AO356_04225 at 960.494 kb on - strand, within AO356_04225 at 960.789 kb on + strand at 960.790 kb on - strand at 960.790 kb on - strand at 960.790 kb on - strand at 960.831 kb on + strand at 960.832 kb on - strand at 960.864 kb on - strand at 961.096 kb on + strand, within AO356_04230 at 961.096 kb on + strand, within AO356_04230 at 961.096 kb on + strand, within AO356_04230 at 961.097 kb on - strand, within AO356_04230 at 961.139 kb on - strand, within AO356_04230 at 961.147 kb on + strand, within AO356_04230 at 961.148 kb on - strand, within AO356_04230 at 961.279 kb on - strand at 961.279 kb on - strand at 961.279 kb on - strand at 961.412 kb on + strand, within AO356_04235 at 961.412 kb on + strand, within AO356_04235
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 959,270 - AO356_04220 0.39 -0.4 959,270 - AO356_04220 0.39 -0.2 959,270 - AO356_04220 0.39 -0.1 959,275 + AO356_04220 0.39 -0.1 959,333 - AO356_04220 0.46 -0.7 959,333 - AO356_04220 0.46 -0.6 959,333 - AO356_04220 0.46 -1.5 959,333 - AO356_04220 0.46 +1.3 959,354 - AO356_04220 0.48 -1.5 959,522 + AO356_04220 0.68 -0.4 959,522 + AO356_04220 0.68 -0.2 959,523 - AO356_04220 0.68 -0.8 959,559 + AO356_04220 0.72 -1.1 959,559 + AO356_04220 0.72 -0.1 959,559 + AO356_04220 0.72 +0.9 959,560 - AO356_04220 0.72 -1.2 959,575 + AO356_04220 0.74 +1.5 959,575 + AO356_04220 0.74 -0.3 959,576 - AO356_04220 0.74 -0.8 959,587 + AO356_04220 0.75 +0.4 959,587 + AO356_04220 0.75 -0.7 959,587 + AO356_04220 0.75 +0.9 959,588 - AO356_04220 0.75 +0.5 959,588 - AO356_04220 0.75 -1.7 959,588 - AO356_04220 0.75 +0.9 959,716 + -1.3 959,716 + -0.4 959,717 - -0.6 959,717 - +0.0 959,740 + -0.4 959,741 - -0.7 959,790 + -0.3 959,790 + -0.3 959,794 + -0.1 959,795 - -1.2 959,951 + -0.1 959,961 - -2.9 959,961 - +0.0 959,961 - +0.5 959,974 + -0.1 960,026 - +0.1 960,093 + -0.9 960,093 + -0.7 960,093 + +0.4 960,093 + +0.9 960,093 + -0.6 960,093 + +0.5 960,093 + +1.2 960,093 + +0.4 960,093 + -1.8 960,093 + +0.9 960,093 + -1.2 960,093 + -1.1 960,094 - +0.2 960,094 - -0.7 960,094 - -0.3 960,094 - -0.3 960,094 - +0.0 960,094 - -0.6 960,094 - +0.1 960,149 + -0.6 960,150 - -1.8 960,150 - -1.5 960,150 - -0.7 960,316 + AO356_04225 0.22 +0.4 960,316 + AO356_04225 0.22 +0.4 960,421 + AO356_04225 0.40 -0.1 960,422 - AO356_04225 0.40 -0.3 960,422 - AO356_04225 0.40 -1.7 960,422 - AO356_04225 0.40 +1.9 960,422 - AO356_04225 0.40 -0.1 960,493 + AO356_04225 0.52 +0.4 960,493 + AO356_04225 0.52 -0.1 960,494 - AO356_04225 0.52 -2.0 960,494 - AO356_04225 0.52 -0.8 960,494 - AO356_04225 0.52 -0.8 960,789 + -0.1 960,790 - -0.7 960,790 - +2.1 960,790 - +1.2 960,831 + -0.7 960,832 - +0.3 960,864 - -0.4 961,096 + AO356_04230 0.52 +1.1 961,096 + AO356_04230 0.52 +2.8 961,096 + AO356_04230 0.52 +1.2 961,097 - AO356_04230 0.52 -0.6 961,139 - AO356_04230 0.65 +1.1 961,147 + AO356_04230 0.68 +0.3 961,148 - AO356_04230 0.68 +0.5 961,279 - -0.6 961,279 - -2.1 961,279 - -1.4 961,412 + AO356_04235 0.12 -1.5 961,412 + AO356_04235 0.12 +0.9
Or see this region's nucleotide sequence