Experiment: Cisplatin 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02500 and AO356_02505 are separated by 275 nucleotides AO356_02505 and AO356_02510 are separated by 64 nucleotides AO356_02510 and AO356_02515 are separated by 142 nucleotides AO356_02515 and AO356_02520 overlap by 55 nucleotides
AO356_02500: AO356_02500 - 2-alkenal reductase, at 542,300 to 543,334
_02500
AO356_02505: AO356_02505 - nucleoid-associated protein, at 543,610 to 543,948
_02505
AO356_02510: AO356_02510 - DNA polymerase III subunit gamma/tau, at 544,013 to 546,088
_02510
AO356_02515: AO356_02515 - amino acid ABC transporter substrate-binding protein, at 546,231 to 547,001
_02515
AO356_02520: AO356_02520 - diguanylate cyclase, at 546,947 to 548,695
_02520
Position (kb) 544
545
546
547 Strain fitness (log2 ratio) -2
-1
0
1 at 543.144 kb on + strand, within AO356_02500 at 543.144 kb on + strand, within AO356_02500 at 543.145 kb on - strand, within AO356_02500 at 543.145 kb on - strand, within AO356_02500 at 543.177 kb on + strand, within AO356_02500 at 543.178 kb on - strand, within AO356_02500 at 543.366 kb on + strand at 543.366 kb on + strand at 543.366 kb on + strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.367 kb on - strand at 543.368 kb on + strand at 543.368 kb on + strand at 543.369 kb on - strand at 543.369 kb on - strand at 543.369 kb on - strand at 543.447 kb on + strand at 543.514 kb on + strand at 543.514 kb on + strand at 543.514 kb on + strand at 543.514 kb on + strand at 543.523 kb on + strand at 543.524 kb on - strand at 543.539 kb on + strand at 543.584 kb on + strand at 543.585 kb on - strand at 543.585 kb on - strand at 543.585 kb on - strand at 544.014 kb on + strand at 544.014 kb on + strand at 544.014 kb on + strand at 544.015 kb on - strand at 546.167 kb on + strand at 546.167 kb on + strand at 546.168 kb on - strand at 546.168 kb on - strand at 546.168 kb on - strand at 546.176 kb on + strand at 546.176 kb on + strand at 546.177 kb on - strand at 546.177 kb on - strand at 546.177 kb on - strand at 546.177 kb on - strand at 546.181 kb on + strand at 546.181 kb on + strand at 546.182 kb on - strand at 546.182 kb on - strand at 546.212 kb on + strand at 546.212 kb on + strand at 546.231 kb on - strand at 546.231 kb on - strand at 546.231 kb on - strand at 546.231 kb on - strand at 546.231 kb on - strand at 546.403 kb on + strand, within AO356_02515 at 546.403 kb on + strand, within AO356_02515 at 546.403 kb on + strand, within AO356_02515 at 546.403 kb on + strand, within AO356_02515 at 546.486 kb on + strand, within AO356_02515 at 546.486 kb on + strand, within AO356_02515 at 546.486 kb on + strand, within AO356_02515 at 546.487 kb on - strand, within AO356_02515 at 546.487 kb on - strand, within AO356_02515 at 546.487 kb on - strand, within AO356_02515 at 546.487 kb on - strand, within AO356_02515 at 546.487 kb on - strand, within AO356_02515 at 546.523 kb on - strand, within AO356_02515 at 546.523 kb on - strand, within AO356_02515 at 546.758 kb on + strand, within AO356_02515 at 546.759 kb on - strand, within AO356_02515 at 546.794 kb on + strand, within AO356_02515 at 546.795 kb on - strand, within AO356_02515 at 546.852 kb on + strand, within AO356_02515 at 546.852 kb on + strand, within AO356_02515 at 546.853 kb on - strand, within AO356_02515 at 546.853 kb on - strand, within AO356_02515 at 546.901 kb on + strand, within AO356_02515 at 546.901 kb on + strand, within AO356_02515 at 546.902 kb on - strand, within AO356_02515 at 546.902 kb on - strand, within AO356_02515 at 546.948 kb on + strand at 546.949 kb on - strand at 546.949 kb on - strand at 546.949 kb on - strand at 547.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml remove 543,144 + AO356_02500 0.82 -1.7 543,144 + AO356_02500 0.82 -0.1 543,145 - AO356_02500 0.82 +1.1 543,145 - AO356_02500 0.82 +0.1 543,177 + AO356_02500 0.85 -1.1 543,178 - AO356_02500 0.85 -0.1 543,366 + -0.6 543,366 + -0.6 543,366 + +0.2 543,367 - -2.1 543,367 - +0.2 543,367 - -0.9 543,367 - +0.4 543,367 - -0.5 543,367 - -0.5 543,367 - -0.8 543,367 - -0.7 543,367 - +0.5 543,367 - -1.3 543,368 + +0.7 543,368 + +0.1 543,369 - -0.5 543,369 - -0.1 543,369 - +0.8 543,447 + -0.6 543,514 + -0.5 543,514 + -1.6 543,514 + +0.7 543,514 + -1.5 543,523 + -0.5 543,524 - -0.1 543,539 + +0.1 543,584 + +0.6 543,585 - -0.4 543,585 - -1.1 543,585 - +0.1 544,014 + +0.7 544,014 + -0.7 544,014 + +0.6 544,015 - +0.4 546,167 + -2.1 546,167 + -0.6 546,168 - +0.4 546,168 - -0.5 546,168 - +0.7 546,176 + -0.8 546,176 + -1.0 546,177 - -0.6 546,177 - -1.7 546,177 - -0.3 546,177 - -0.9 546,181 + -0.4 546,181 + -1.5 546,182 - +0.2 546,182 - +0.1 546,212 + -1.4 546,212 + -1.1 546,231 - -0.7 546,231 - -0.1 546,231 - +0.1 546,231 - -0.1 546,231 - +0.1 546,403 + AO356_02515 0.22 +0.3 546,403 + AO356_02515 0.22 -1.3 546,403 + AO356_02515 0.22 -0.9 546,403 + AO356_02515 0.22 -1.1 546,486 + AO356_02515 0.33 +0.6 546,486 + AO356_02515 0.33 +1.2 546,486 + AO356_02515 0.33 +0.7 546,487 - AO356_02515 0.33 +0.1 546,487 - AO356_02515 0.33 +0.5 546,487 - AO356_02515 0.33 +0.5 546,487 - AO356_02515 0.33 -0.1 546,487 - AO356_02515 0.33 -0.9 546,523 - AO356_02515 0.38 -0.1 546,523 - AO356_02515 0.38 +0.7 546,758 + AO356_02515 0.68 +0.0 546,759 - AO356_02515 0.68 +0.1 546,794 + AO356_02515 0.73 +0.4 546,795 - AO356_02515 0.73 -0.9 546,852 + AO356_02515 0.81 -0.1 546,852 + AO356_02515 0.81 +0.5 546,853 - AO356_02515 0.81 -0.6 546,853 - AO356_02515 0.81 -0.4 546,901 + AO356_02515 0.87 +0.1 546,901 + AO356_02515 0.87 +0.2 546,902 - AO356_02515 0.87 -0.2 546,902 - AO356_02515 0.87 +0.2 546,948 + +0.1 546,949 - -0.1 546,949 - -0.3 546,949 - -0.9 547,059 - +0.3
Or see this region's nucleotide sequence