Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00170

Experiment: Cisplatin 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00160 and AO356_00165 are separated by 9 nucleotidesAO356_00165 and AO356_00170 overlap by 19 nucleotidesAO356_00170 and AO356_00175 overlap by 4 nucleotidesAO356_00175 and AO356_00180 are separated by 9 nucleotides AO356_00160: AO356_00160 - chemotaxis protein, at 29,493 to 30,164 _00160 AO356_00165: AO356_00165 - hypothetical protein, at 30,174 to 30,893 _00165 AO356_00170: AO356_00170 - lytic transglycosylase, at 30,875 to 31,423 _00170 AO356_00175: AO356_00175 - conjugal transfer protein, at 31,420 to 31,935 _00175 AO356_00180: AO356_00180 - conjugal transfer protein TraG, at 31,945 to 34,050 _00180 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 30.029 kb on + strand, within AO356_00160at 30.187 kb on + strandat 30.472 kb on + strand, within AO356_00165at 30.473 kb on - strand, within AO356_00165at 30.522 kb on + strand, within AO356_00165at 30.522 kb on + strand, within AO356_00165at 30.523 kb on - strand, within AO356_00165at 30.629 kb on - strand, within AO356_00165at 30.629 kb on - strand, within AO356_00165at 30.696 kb on - strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.699 kb on + strand, within AO356_00165at 30.700 kb on - strand, within AO356_00165at 30.700 kb on - strand, within AO356_00165at 30.700 kb on - strand, within AO356_00165at 30.700 kb on - strand, within AO356_00165at 30.703 kb on + strand, within AO356_00165at 30.703 kb on + strand, within AO356_00165at 30.703 kb on + strand, within AO356_00165at 30.704 kb on - strand, within AO356_00165at 30.792 kb on - strand, within AO356_00165at 30.898 kb on + strandat 31.126 kb on - strand, within AO356_00170at 31.189 kb on - strand, within AO356_00170at 31.266 kb on + strand, within AO356_00170at 31.319 kb on + strand, within AO356_00170at 31.437 kb on + strandat 31.461 kb on - strandat 31.461 kb on - strandat 31.554 kb on + strand, within AO356_00175at 31.554 kb on + strand, within AO356_00175at 31.555 kb on - strand, within AO356_00175at 31.555 kb on - strand, within AO356_00175at 31.689 kb on - strand, within AO356_00175at 31.845 kb on + strand, within AO356_00175at 31.845 kb on + strand, within AO356_00175at 31.846 kb on - strand, within AO356_00175at 31.898 kb on - strandat 31.993 kb on + strandat 31.993 kb on + strandat 31.994 kb on - strandat 31.994 kb on - strandat 31.994 kb on - strandat 31.994 kb on - strandat 32.000 kb on + strandat 32.035 kb on + strandat 32.092 kb on + strandat 32.093 kb on - strandat 32.094 kb on + strandat 32.146 kb on - strandat 32.146 kb on - strandat 32.155 kb on - strandat 32.373 kb on + strand, within AO356_00180at 32.374 kb on - strand, within AO356_00180

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0032 mg/ml
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30,029 + AO356_00160 0.80 -0.1
30,187 + +0.0
30,472 + AO356_00165 0.41 +0.0
30,473 - AO356_00165 0.42 -0.2
30,522 + AO356_00165 0.48 +0.8
30,522 + AO356_00165 0.48 -2.5
30,523 - AO356_00165 0.48 -0.7
30,629 - AO356_00165 0.63 +1.1
30,629 - AO356_00165 0.63 -1.4
30,696 - AO356_00165 0.72 +0.1
30,699 + AO356_00165 0.73 +1.3
30,699 + AO356_00165 0.73 +0.2
30,699 + AO356_00165 0.73 -0.4
30,699 + AO356_00165 0.73 +1.7
30,699 + AO356_00165 0.73 +0.7
30,700 - AO356_00165 0.73 -0.8
30,700 - AO356_00165 0.73 +0.2
30,700 - AO356_00165 0.73 -0.0
30,700 - AO356_00165 0.73 -1.0
30,703 + AO356_00165 0.73 -0.2
30,703 + AO356_00165 0.73 +0.8
30,703 + AO356_00165 0.73 +0.6
30,704 - AO356_00165 0.74 -0.1
30,792 - AO356_00165 0.86 +0.2
30,898 + -0.8
31,126 - AO356_00170 0.46 -0.2
31,189 - AO356_00170 0.57 -0.3
31,266 + AO356_00170 0.71 +0.8
31,319 + AO356_00170 0.81 +1.5
31,437 + +0.1
31,461 - -0.1
31,461 - +0.2
31,554 + AO356_00175 0.26 -0.2
31,554 + AO356_00175 0.26 +0.3
31,555 - AO356_00175 0.26 +0.1
31,555 - AO356_00175 0.26 -0.4
31,689 - AO356_00175 0.52 -0.6
31,845 + AO356_00175 0.82 +0.7
31,845 + AO356_00175 0.82 -0.2
31,846 - AO356_00175 0.83 -0.2
31,898 - -0.2
31,993 + +0.9
31,993 + +1.1
31,994 - -1.0
31,994 - -0.5
31,994 - -0.4
31,994 - +0.1
32,000 + +0.1
32,035 + -0.8
32,092 + -0.3
32,093 - +1.8
32,094 + -0.8
32,146 - -0.0
32,146 - -0.2
32,155 - +0.1
32,373 + AO356_00180 0.20 -0.5
32,374 - AO356_00180 0.20 -0.2

Or see this region's nucleotide sequence