Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19835

Experiment: Beta-alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19830 and ABZR87_RS19835 are separated by 69 nucleotidesABZR87_RS19835 and ABZR87_RS19840 are separated by 331 nucleotides ABZR87_RS19830: ABZR87_RS19830 - porin, at 822,316 to 823,380 _RS19830 ABZR87_RS19835: ABZR87_RS19835 - D-amino acid dehydrogenase, at 823,450 to 824,703 _RS19835 ABZR87_RS19840: ABZR87_RS19840 - ethanolamine ammonia-lyase subunit EutC, at 825,035 to 825,820 _RS19840 Position (kb) 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1at 822.534 kb on + strand, within ABZR87_RS19830at 822.535 kb on - strand, within ABZR87_RS19830at 822.535 kb on - strand, within ABZR87_RS19830at 822.549 kb on + strand, within ABZR87_RS19830at 822.549 kb on + strand, within ABZR87_RS19830at 822.644 kb on - strand, within ABZR87_RS19830at 822.655 kb on + strand, within ABZR87_RS19830at 822.655 kb on + strand, within ABZR87_RS19830at 822.670 kb on + strand, within ABZR87_RS19830at 822.670 kb on + strand, within ABZR87_RS19830at 822.700 kb on + strand, within ABZR87_RS19830at 822.700 kb on + strand, within ABZR87_RS19830at 822.701 kb on - strand, within ABZR87_RS19830at 822.724 kb on - strand, within ABZR87_RS19830at 822.724 kb on - strand, within ABZR87_RS19830at 822.754 kb on + strand, within ABZR87_RS19830at 822.754 kb on + strand, within ABZR87_RS19830at 822.754 kb on + strand, within ABZR87_RS19830at 822.787 kb on + strand, within ABZR87_RS19830at 822.787 kb on + strand, within ABZR87_RS19830at 822.787 kb on + strand, within ABZR87_RS19830at 822.787 kb on + strand, within ABZR87_RS19830at 822.788 kb on - strand, within ABZR87_RS19830at 822.889 kb on + strand, within ABZR87_RS19830at 822.889 kb on + strand, within ABZR87_RS19830at 822.889 kb on + strand, within ABZR87_RS19830at 822.890 kb on - strand, within ABZR87_RS19830at 822.890 kb on - strand, within ABZR87_RS19830at 822.923 kb on - strand, within ABZR87_RS19830at 822.923 kb on - strand, within ABZR87_RS19830at 823.020 kb on + strand, within ABZR87_RS19830at 823.020 kb on + strand, within ABZR87_RS19830at 823.021 kb on - strand, within ABZR87_RS19830at 823.039 kb on + strand, within ABZR87_RS19830at 823.040 kb on - strand, within ABZR87_RS19830at 823.050 kb on + strand, within ABZR87_RS19830at 823.050 kb on + strand, within ABZR87_RS19830at 823.051 kb on - strand, within ABZR87_RS19830at 823.051 kb on - strand, within ABZR87_RS19830at 823.078 kb on + strand, within ABZR87_RS19830at 823.079 kb on - strand, within ABZR87_RS19830at 823.079 kb on - strand, within ABZR87_RS19830at 823.096 kb on + strand, within ABZR87_RS19830at 823.097 kb on - strand, within ABZR87_RS19830at 823.097 kb on - strand, within ABZR87_RS19830at 823.097 kb on - strand, within ABZR87_RS19830at 823.097 kb on - strand, within ABZR87_RS19830at 823.097 kb on - strand, within ABZR87_RS19830at 823.097 kb on - strand, within ABZR87_RS19830at 823.097 kb on - strand, within ABZR87_RS19830at 823.216 kb on + strand, within ABZR87_RS19830at 823.216 kb on + strand, within ABZR87_RS19830at 823.217 kb on - strand, within ABZR87_RS19830at 823.258 kb on + strand, within ABZR87_RS19830at 823.258 kb on + strand, within ABZR87_RS19830at 823.258 kb on + strand, within ABZR87_RS19830at 823.259 kb on - strand, within ABZR87_RS19830at 823.327 kb on + strandat 823.327 kb on + strandat 823.328 kb on - strandat 823.328 kb on - strandat 823.328 kb on - strandat 823.544 kb on + strandat 823.544 kb on + strandat 823.544 kb on + strandat 823.545 kb on - strandat 823.545 kb on - strandat 823.545 kb on - strandat 823.706 kb on + strand, within ABZR87_RS19835at 823.850 kb on + strand, within ABZR87_RS19835at 823.866 kb on - strand, within ABZR87_RS19835at 823.866 kb on - strand, within ABZR87_RS19835at 823.899 kb on + strand, within ABZR87_RS19835at 823.954 kb on + strand, within ABZR87_RS19835at 823.955 kb on - strand, within ABZR87_RS19835at 823.955 kb on - strand, within ABZR87_RS19835at 824.061 kb on + strand, within ABZR87_RS19835at 824.061 kb on + strand, within ABZR87_RS19835at 824.147 kb on + strand, within ABZR87_RS19835at 824.147 kb on + strand, within ABZR87_RS19835at 824.148 kb on - strand, within ABZR87_RS19835at 824.156 kb on + strand, within ABZR87_RS19835at 824.156 kb on + strand, within ABZR87_RS19835at 824.157 kb on - strand, within ABZR87_RS19835at 824.159 kb on + strand, within ABZR87_RS19835at 824.159 kb on + strand, within ABZR87_RS19835at 824.159 kb on + strand, within ABZR87_RS19835at 824.159 kb on + strand, within ABZR87_RS19835at 824.159 kb on + strand, within ABZR87_RS19835at 824.160 kb on - strand, within ABZR87_RS19835at 824.160 kb on - strand, within ABZR87_RS19835at 824.160 kb on - strand, within ABZR87_RS19835at 824.285 kb on + strand, within ABZR87_RS19835at 824.285 kb on + strand, within ABZR87_RS19835at 824.285 kb on + strand, within ABZR87_RS19835at 824.286 kb on - strand, within ABZR87_RS19835at 824.286 kb on - strand, within ABZR87_RS19835at 824.286 kb on - strand, within ABZR87_RS19835at 824.286 kb on - strand, within ABZR87_RS19835at 824.444 kb on + strand, within ABZR87_RS19835at 824.444 kb on + strand, within ABZR87_RS19835at 824.444 kb on + strand, within ABZR87_RS19835at 824.444 kb on + strand, within ABZR87_RS19835at 824.445 kb on - strand, within ABZR87_RS19835at 824.445 kb on - strand, within ABZR87_RS19835at 824.600 kb on + strandat 824.600 kb on + strandat 824.600 kb on + strandat 824.652 kb on - strandat 824.659 kb on - strandat 824.671 kb on + strandat 824.672 kb on - strandat 824.918 kb on + strandat 824.919 kb on - strandat 825.165 kb on + strand, within ABZR87_RS19840at 825.165 kb on + strand, within ABZR87_RS19840at 825.165 kb on + strand, within ABZR87_RS19840at 825.166 kb on - strand, within ABZR87_RS19840at 825.237 kb on + strand, within ABZR87_RS19840at 825.242 kb on + strand, within ABZR87_RS19840at 825.242 kb on + strand, within ABZR87_RS19840at 825.243 kb on - strand, within ABZR87_RS19840at 825.243 kb on - strand, within ABZR87_RS19840at 825.243 kb on - strand, within ABZR87_RS19840at 825.246 kb on + strand, within ABZR87_RS19840at 825.246 kb on + strand, within ABZR87_RS19840at 825.246 kb on + strand, within ABZR87_RS19840at 825.247 kb on - strand, within ABZR87_RS19840at 825.247 kb on - strand, within ABZR87_RS19840at 825.247 kb on - strand, within ABZR87_RS19840at 825.247 kb on - strand, within ABZR87_RS19840at 825.254 kb on + strand, within ABZR87_RS19840at 825.255 kb on - strand, within ABZR87_RS19840at 825.255 kb on - strand, within ABZR87_RS19840at 825.255 kb on - strand, within ABZR87_RS19840

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-alanine (C)
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822,534 + ABZR87_RS19830 0.20 +1.0
822,535 - ABZR87_RS19830 0.21 +0.1
822,535 - ABZR87_RS19830 0.21 -1.5
822,549 + ABZR87_RS19830 0.22 +0.4
822,549 + ABZR87_RS19830 0.22 -0.0
822,644 - ABZR87_RS19830 0.31 +0.3
822,655 + ABZR87_RS19830 0.32 +0.4
822,655 + ABZR87_RS19830 0.32 +0.3
822,670 + ABZR87_RS19830 0.33 +0.3
822,670 + ABZR87_RS19830 0.33 +0.3
822,700 + ABZR87_RS19830 0.36 +0.6
822,700 + ABZR87_RS19830 0.36 -0.2
822,701 - ABZR87_RS19830 0.36 +0.4
822,724 - ABZR87_RS19830 0.38 +0.6
822,724 - ABZR87_RS19830 0.38 +0.2
822,754 + ABZR87_RS19830 0.41 -0.2
822,754 + ABZR87_RS19830 0.41 +0.2
822,754 + ABZR87_RS19830 0.41 +0.7
822,787 + ABZR87_RS19830 0.44 +0.5
822,787 + ABZR87_RS19830 0.44 +0.9
822,787 + ABZR87_RS19830 0.44 +0.4
822,787 + ABZR87_RS19830 0.44 -0.7
822,788 - ABZR87_RS19830 0.44 -0.3
822,889 + ABZR87_RS19830 0.54 +0.2
822,889 + ABZR87_RS19830 0.54 -0.7
822,889 + ABZR87_RS19830 0.54 +0.9
822,890 - ABZR87_RS19830 0.54 -0.0
822,890 - ABZR87_RS19830 0.54 +0.3
822,923 - ABZR87_RS19830 0.57 -0.0
822,923 - ABZR87_RS19830 0.57 +0.2
823,020 + ABZR87_RS19830 0.66 +0.2
823,020 + ABZR87_RS19830 0.66 -0.3
823,021 - ABZR87_RS19830 0.66 +0.6
823,039 + ABZR87_RS19830 0.68 +0.2
823,040 - ABZR87_RS19830 0.68 +0.3
823,050 + ABZR87_RS19830 0.69 +0.0
823,050 + ABZR87_RS19830 0.69 +1.0
823,051 - ABZR87_RS19830 0.69 -0.0
823,051 - ABZR87_RS19830 0.69 -0.0
823,078 + ABZR87_RS19830 0.72 -0.3
823,079 - ABZR87_RS19830 0.72 +0.4
823,079 - ABZR87_RS19830 0.72 -0.1
823,096 + ABZR87_RS19830 0.73 +0.4
823,097 - ABZR87_RS19830 0.73 -0.2
823,097 - ABZR87_RS19830 0.73 -0.3
823,097 - ABZR87_RS19830 0.73 +0.4
823,097 - ABZR87_RS19830 0.73 -0.7
823,097 - ABZR87_RS19830 0.73 +0.0
823,097 - ABZR87_RS19830 0.73 -0.3
823,097 - ABZR87_RS19830 0.73 +0.0
823,216 + ABZR87_RS19830 0.85 -0.0
823,216 + ABZR87_RS19830 0.85 +1.0
823,217 - ABZR87_RS19830 0.85 +0.7
823,258 + ABZR87_RS19830 0.88 -0.0
823,258 + ABZR87_RS19830 0.88 -0.8
823,258 + ABZR87_RS19830 0.88 +0.5
823,259 - ABZR87_RS19830 0.89 -0.1
823,327 + +0.3
823,327 + -0.2
823,328 - +0.7
823,328 - -0.1
823,328 - -0.1
823,544 + -2.3
823,544 + -2.6
823,544 + -1.7
823,545 - -3.0
823,545 - -0.9
823,545 - -0.5
823,706 + ABZR87_RS19835 0.20 -0.7
823,850 + ABZR87_RS19835 0.32 -2.2
823,866 - ABZR87_RS19835 0.33 -0.4
823,866 - ABZR87_RS19835 0.33 -0.7
823,899 + ABZR87_RS19835 0.36 -1.0
823,954 + ABZR87_RS19835 0.40 -1.8
823,955 - ABZR87_RS19835 0.40 -1.2
823,955 - ABZR87_RS19835 0.40 -1.0
824,061 + ABZR87_RS19835 0.49 -1.3
824,061 + ABZR87_RS19835 0.49 -1.1
824,147 + ABZR87_RS19835 0.56 -0.0
824,147 + ABZR87_RS19835 0.56 -1.7
824,148 - ABZR87_RS19835 0.56 -2.4
824,156 + ABZR87_RS19835 0.56 -1.8
824,156 + ABZR87_RS19835 0.56 -0.4
824,157 - ABZR87_RS19835 0.56 -2.0
824,159 + ABZR87_RS19835 0.57 -1.0
824,159 + ABZR87_RS19835 0.57 -0.8
824,159 + ABZR87_RS19835 0.57 -0.3
824,159 + ABZR87_RS19835 0.57 -0.6
824,159 + ABZR87_RS19835 0.57 -1.2
824,160 - ABZR87_RS19835 0.57 -0.3
824,160 - ABZR87_RS19835 0.57 +0.7
824,160 - ABZR87_RS19835 0.57 -0.7
824,285 + ABZR87_RS19835 0.67 -0.9
824,285 + ABZR87_RS19835 0.67 -0.5
824,285 + ABZR87_RS19835 0.67 -2.4
824,286 - ABZR87_RS19835 0.67 -1.0
824,286 - ABZR87_RS19835 0.67 -1.7
824,286 - ABZR87_RS19835 0.67 -1.0
824,286 - ABZR87_RS19835 0.67 -2.9
824,444 + ABZR87_RS19835 0.79 -0.8
824,444 + ABZR87_RS19835 0.79 -1.7
824,444 + ABZR87_RS19835 0.79 -2.1
824,444 + ABZR87_RS19835 0.79 -1.8
824,445 - ABZR87_RS19835 0.79 -0.7
824,445 - ABZR87_RS19835 0.79 +0.3
824,600 + -0.7
824,600 + -1.6
824,600 + -2.5
824,652 - -0.7
824,659 - -1.2
824,671 + +0.5
824,672 - +1.1
824,918 + -0.2
824,919 - -1.4
825,165 + ABZR87_RS19840 0.17 -0.5
825,165 + ABZR87_RS19840 0.17 +0.5
825,165 + ABZR87_RS19840 0.17 +0.5
825,166 - ABZR87_RS19840 0.17 +0.2
825,237 + ABZR87_RS19840 0.26 +1.3
825,242 + ABZR87_RS19840 0.26 +0.2
825,242 + ABZR87_RS19840 0.26 +0.3
825,243 - ABZR87_RS19840 0.26 +0.7
825,243 - ABZR87_RS19840 0.26 -0.2
825,243 - ABZR87_RS19840 0.26 +0.5
825,246 + ABZR87_RS19840 0.27 +0.0
825,246 + ABZR87_RS19840 0.27 +1.2
825,246 + ABZR87_RS19840 0.27 +0.8
825,247 - ABZR87_RS19840 0.27 +0.9
825,247 - ABZR87_RS19840 0.27 +0.0
825,247 - ABZR87_RS19840 0.27 +0.7
825,247 - ABZR87_RS19840 0.27 +1.1
825,254 + ABZR87_RS19840 0.28 -0.9
825,255 - ABZR87_RS19840 0.28 +0.2
825,255 - ABZR87_RS19840 0.28 +0.0
825,255 - ABZR87_RS19840 0.28 +0.2

Or see this region's nucleotide sequence