Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03455

Experiment: Beta-alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03450 and ABZR87_RS03455 are separated by 16 nucleotidesABZR87_RS03455 and ABZR87_RS03460 are separated by 22 nucleotides ABZR87_RS03450: ABZR87_RS03450 - type II secretion system secretin GspD, at 719,048 to 721,465 _RS03450 ABZR87_RS03455: ABZR87_RS03455 - type II secretion system ATPase GspE, at 721,482 to 723,038 _RS03455 ABZR87_RS03460: ABZR87_RS03460 - type II secretion system inner membrane protein GspF, at 723,061 to 724,272 _RS03460 Position (kb) 721 722 723 724Strain fitness (log2 ratio) -1 0 1at 720.756 kb on - strand, within ABZR87_RS03450at 720.756 kb on - strand, within ABZR87_RS03450at 721.016 kb on + strand, within ABZR87_RS03450at 721.017 kb on - strand, within ABZR87_RS03450at 721.017 kb on - strand, within ABZR87_RS03450at 721.017 kb on - strand, within ABZR87_RS03450at 721.144 kb on + strand, within ABZR87_RS03450at 721.144 kb on + strand, within ABZR87_RS03450at 721.181 kb on + strand, within ABZR87_RS03450at 721.181 kb on + strand, within ABZR87_RS03450at 721.182 kb on - strand, within ABZR87_RS03450at 721.182 kb on - strand, within ABZR87_RS03450at 721.182 kb on - strand, within ABZR87_RS03450at 721.187 kb on + strand, within ABZR87_RS03450at 721.187 kb on + strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.298 kb on + strandat 721.298 kb on + strandat 721.298 kb on + strandat 721.298 kb on + strandat 721.298 kb on + strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.337 kb on - strandat 721.434 kb on - strandat 721.557 kb on + strandat 721.691 kb on - strand, within ABZR87_RS03455at 721.734 kb on + strand, within ABZR87_RS03455at 721.734 kb on + strand, within ABZR87_RS03455at 721.734 kb on + strand, within ABZR87_RS03455at 721.735 kb on - strand, within ABZR87_RS03455at 721.735 kb on - strand, within ABZR87_RS03455at 721.735 kb on - strand, within ABZR87_RS03455at 721.886 kb on + strand, within ABZR87_RS03455at 721.887 kb on - strand, within ABZR87_RS03455at 721.887 kb on - strand, within ABZR87_RS03455at 722.113 kb on + strand, within ABZR87_RS03455at 722.113 kb on + strand, within ABZR87_RS03455at 722.213 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.317 kb on - strand, within ABZR87_RS03455at 722.382 kb on + strand, within ABZR87_RS03455at 722.382 kb on + strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.551 kb on + strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.552 kb on - strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.671 kb on + strand, within ABZR87_RS03455at 722.839 kb on - strand, within ABZR87_RS03455at 722.859 kb on + strand, within ABZR87_RS03455at 722.859 kb on + strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 722.860 kb on - strand, within ABZR87_RS03455at 723.036 kb on + strandat 723.036 kb on + strandat 723.036 kb on + strandat 723.036 kb on + strandat 723.037 kb on - strandat 723.055 kb on + strandat 723.055 kb on + strandat 723.056 kb on - strandat 723.056 kb on - strandat 723.076 kb on + strandat 723.352 kb on + strand, within ABZR87_RS03460at 723.352 kb on + strand, within ABZR87_RS03460at 723.352 kb on + strand, within ABZR87_RS03460at 723.353 kb on - strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.451 kb on + strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.452 kb on - strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.520 kb on + strand, within ABZR87_RS03460at 723.521 kb on - strand, within ABZR87_RS03460at 723.572 kb on - strand, within ABZR87_RS03460at 723.625 kb on + strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.626 kb on - strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.650 kb on + strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.651 kb on - strand, within ABZR87_RS03460at 723.797 kb on + strand, within ABZR87_RS03460at 723.798 kb on - strand, within ABZR87_RS03460at 723.798 kb on - strand, within ABZR87_RS03460at 723.860 kb on - strand, within ABZR87_RS03460

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-alanine (C)
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720,756 - ABZR87_RS03450 0.71 -0.4
720,756 - ABZR87_RS03450 0.71 -0.6
721,016 + ABZR87_RS03450 0.81 -0.3
721,017 - ABZR87_RS03450 0.81 -0.2
721,017 - ABZR87_RS03450 0.81 -0.5
721,017 - ABZR87_RS03450 0.81 -0.5
721,144 + ABZR87_RS03450 0.87 -1.3
721,144 + ABZR87_RS03450 0.87 -0.2
721,181 + ABZR87_RS03450 0.88 -0.6
721,181 + ABZR87_RS03450 0.88 -0.9
721,182 - ABZR87_RS03450 0.88 -0.3
721,182 - ABZR87_RS03450 0.88 +0.3
721,182 - ABZR87_RS03450 0.88 +0.1
721,187 + ABZR87_RS03450 0.88 -0.4
721,187 + ABZR87_RS03450 0.88 -0.6
721,188 - ABZR87_RS03450 0.89 -0.0
721,188 - ABZR87_RS03450 0.89 +0.4
721,188 - ABZR87_RS03450 0.89 -0.2
721,188 - ABZR87_RS03450 0.89 -0.6
721,188 - ABZR87_RS03450 0.89 -1.2
721,188 - ABZR87_RS03450 0.89 +0.6
721,188 - ABZR87_RS03450 0.89 -0.3
721,188 - ABZR87_RS03450 0.89 -1.0
721,188 - ABZR87_RS03450 0.89 -0.4
721,298 + +0.0
721,298 + +1.0
721,298 + -0.6
721,298 + +0.2
721,298 + -0.1
721,299 - +0.4
721,299 - -0.7
721,299 - +0.5
721,299 - -1.0
721,299 - -0.0
721,299 - -0.7
721,337 - +0.5
721,434 - +0.3
721,557 + -0.6
721,691 - ABZR87_RS03455 0.13 -0.5
721,734 + ABZR87_RS03455 0.16 +0.0
721,734 + ABZR87_RS03455 0.16 -0.4
721,734 + ABZR87_RS03455 0.16 -0.4
721,735 - ABZR87_RS03455 0.16 +0.3
721,735 - ABZR87_RS03455 0.16 +0.5
721,735 - ABZR87_RS03455 0.16 -0.4
721,886 + ABZR87_RS03455 0.26 +0.7
721,887 - ABZR87_RS03455 0.26 -0.0
721,887 - ABZR87_RS03455 0.26 +0.4
722,113 + ABZR87_RS03455 0.41 +0.0
722,113 + ABZR87_RS03455 0.41 -0.0
722,213 + ABZR87_RS03455 0.47 -0.1
722,316 + ABZR87_RS03455 0.54 +0.0
722,316 + ABZR87_RS03455 0.54 +0.3
722,316 + ABZR87_RS03455 0.54 +0.8
722,317 - ABZR87_RS03455 0.54 -0.5
722,382 + ABZR87_RS03455 0.58 +0.3
722,382 + ABZR87_RS03455 0.58 +0.2
722,383 - ABZR87_RS03455 0.58 -0.4
722,383 - ABZR87_RS03455 0.58 +0.3
722,383 - ABZR87_RS03455 0.58 -1.0
722,383 - ABZR87_RS03455 0.58 -0.2
722,383 - ABZR87_RS03455 0.58 -0.3
722,551 + ABZR87_RS03455 0.69 -0.0
722,551 + ABZR87_RS03455 0.69 +0.1
722,551 + ABZR87_RS03455 0.69 -0.7
722,551 + ABZR87_RS03455 0.69 -0.7
722,551 + ABZR87_RS03455 0.69 +0.1
722,552 - ABZR87_RS03455 0.69 +0.6
722,552 - ABZR87_RS03455 0.69 +0.0
722,552 - ABZR87_RS03455 0.69 +0.5
722,552 - ABZR87_RS03455 0.69 +0.6
722,671 + ABZR87_RS03455 0.76 +0.4
722,671 + ABZR87_RS03455 0.76 -0.4
722,671 + ABZR87_RS03455 0.76 -0.2
722,671 + ABZR87_RS03455 0.76 -0.3
722,839 - ABZR87_RS03455 0.87 -0.1
722,859 + ABZR87_RS03455 0.88 -0.7
722,859 + ABZR87_RS03455 0.88 -0.2
722,860 - ABZR87_RS03455 0.89 -0.1
722,860 - ABZR87_RS03455 0.89 -0.1
722,860 - ABZR87_RS03455 0.89 -0.7
723,036 + -0.9
723,036 + +0.6
723,036 + +0.5
723,036 + -0.6
723,037 - +0.1
723,055 + -0.2
723,055 + +0.5
723,056 - -0.4
723,056 - -0.4
723,076 + +0.3
723,352 + ABZR87_RS03460 0.24 -0.7
723,352 + ABZR87_RS03460 0.24 -0.3
723,352 + ABZR87_RS03460 0.24 -0.3
723,353 - ABZR87_RS03460 0.24 -0.5
723,451 + ABZR87_RS03460 0.32 +0.1
723,451 + ABZR87_RS03460 0.32 +0.1
723,451 + ABZR87_RS03460 0.32 -1.1
723,451 + ABZR87_RS03460 0.32 -0.8
723,452 - ABZR87_RS03460 0.32 +0.2
723,452 - ABZR87_RS03460 0.32 -0.1
723,452 - ABZR87_RS03460 0.32 -0.1
723,452 - ABZR87_RS03460 0.32 -0.7
723,520 + ABZR87_RS03460 0.38 -0.4
723,520 + ABZR87_RS03460 0.38 -0.2
723,520 + ABZR87_RS03460 0.38 -0.9
723,520 + ABZR87_RS03460 0.38 +0.1
723,520 + ABZR87_RS03460 0.38 -0.6
723,520 + ABZR87_RS03460 0.38 -0.7
723,521 - ABZR87_RS03460 0.38 -1.0
723,572 - ABZR87_RS03460 0.42 -0.4
723,625 + ABZR87_RS03460 0.47 -0.1
723,626 - ABZR87_RS03460 0.47 -0.3
723,626 - ABZR87_RS03460 0.47 -0.5
723,626 - ABZR87_RS03460 0.47 -0.3
723,626 - ABZR87_RS03460 0.47 +0.4
723,626 - ABZR87_RS03460 0.47 +0.5
723,650 + ABZR87_RS03460 0.49 +0.4
723,650 + ABZR87_RS03460 0.49 -0.2
723,650 + ABZR87_RS03460 0.49 +0.2
723,651 - ABZR87_RS03460 0.49 -0.3
723,651 - ABZR87_RS03460 0.49 +0.2
723,651 - ABZR87_RS03460 0.49 +0.7
723,651 - ABZR87_RS03460 0.49 -0.6
723,651 - ABZR87_RS03460 0.49 -0.3
723,651 - ABZR87_RS03460 0.49 -0.4
723,797 + ABZR87_RS03460 0.61 -0.2
723,798 - ABZR87_RS03460 0.61 -0.3
723,798 - ABZR87_RS03460 0.61 +0.7
723,860 - ABZR87_RS03460 0.66 -0.6

Or see this region's nucleotide sequence