Strain Fitness in Sinorhizobium meliloti 1021 around SMc04331

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04330 and SMc04331 are separated by 523 nucleotidesSMc04331 and SMc04332 are separated by 87 nucleotidesSMc04332 and SMc04333 are separated by 39 nucleotides SMc04330: SMc04330 - trimethylamine methyltransferase, at 2,139,018 to 2,140,592 SMc04330 SMc04331: SMc04331 - dimethylamine corrinoid protein, at 2,141,116 to 2,141,814 SMc04331 SMc04332: SMc04332 - entericidin B signal peptide protein, at 2,141,902 to 2,142,060 SMc04332 SMc04333: SMc04333 - hypothetical protein, at 2,142,100 to 2,142,720 SMc04333 Position (kb) 2141 2142Strain fitness (log2 ratio) -2 -1 0 1at 2140.704 kb on - strandat 2140.714 kb on + strandat 2140.735 kb on - strandat 2140.735 kb on - strandat 2140.788 kb on - strandat 2140.895 kb on + strandat 2140.896 kb on - strandat 2140.938 kb on - strandat 2140.987 kb on + strandat 2140.987 kb on + strandat 2140.987 kb on + strandat 2140.988 kb on - strandat 2141.018 kb on - strandat 2141.024 kb on - strandat 2141.024 kb on - strandat 2141.115 kb on + strandat 2141.115 kb on + strandat 2141.116 kb on - strandat 2141.116 kb on - strandat 2141.188 kb on + strand, within SMc04331at 2141.255 kb on - strand, within SMc04331at 2141.255 kb on - strand, within SMc04331at 2141.421 kb on + strand, within SMc04331at 2141.421 kb on + strand, within SMc04331at 2141.421 kb on + strand, within SMc04331at 2141.617 kb on + strand, within SMc04331at 2141.618 kb on - strand, within SMc04331at 2141.618 kb on - strandat 2141.619 kb on + strand, within SMc04331at 2141.619 kb on + strand, within SMc04331at 2141.619 kb on + strand, within SMc04331at 2141.620 kb on - strand, within SMc04331at 2141.637 kb on + strand, within SMc04331at 2141.668 kb on + strand, within SMc04331at 2141.668 kb on + strand, within SMc04331at 2141.668 kb on + strand, within SMc04331at 2141.669 kb on - strand, within SMc04331at 2141.734 kb on + strand, within SMc04331at 2141.776 kb on + strandat 2141.777 kb on - strandat 2141.891 kb on - strandat 2142.416 kb on - strand, within SMc04333at 2142.565 kb on + strand, within SMc04333at 2142.566 kb on - strand, within SMc04333at 2142.566 kb on - strand, within SMc04333at 2142.593 kb on - strand, within SMc04333at 2142.593 kb on - strand, within SMc04333at 2142.649 kb on - strand, within SMc04333at 2142.664 kb on + strandat 2142.664 kb on + strandat 2142.670 kb on + strandat 2142.670 kb on + strandat 2142.671 kb on - strandat 2142.679 kb on - strandat 2142.696 kb on + strandat 2142.696 kb on + strandat 2142.806 kb on + strandat 2142.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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2,140,704 - -1.2
2,140,714 + -1.0
2,140,735 - +0.5
2,140,735 - -0.2
2,140,788 - +0.4
2,140,895 + -0.1
2,140,896 - -2.0
2,140,938 - +1.3
2,140,987 + -0.0
2,140,987 + -0.2
2,140,987 + -0.2
2,140,988 - +0.1
2,141,018 - -0.6
2,141,024 - +0.4
2,141,024 - -0.3
2,141,115 + -0.1
2,141,115 + -0.2
2,141,116 - +0.0
2,141,116 - -0.2
2,141,188 + SMc04331 0.10 -0.2
2,141,255 - SMc04331 0.20 -0.8
2,141,255 - SMc04331 0.20 +0.1
2,141,421 + SMc04331 0.44 -0.4
2,141,421 + SMc04331 0.44 -0.9
2,141,421 + SMc04331 0.44 +0.5
2,141,617 + SMc04331 0.72 -0.1
2,141,618 - SMc04331 0.72 +0.3
2,141,618 - -1.9
2,141,619 + SMc04331 0.72 -1.5
2,141,619 + SMc04331 0.72 +0.0
2,141,619 + SMc04331 0.72 -1.7
2,141,620 - SMc04331 0.72 +0.1
2,141,637 + SMc04331 0.75 -1.4
2,141,668 + SMc04331 0.79 -0.1
2,141,668 + SMc04331 0.79 +1.1
2,141,668 + SMc04331 0.79 -0.2
2,141,669 - SMc04331 0.79 +1.1
2,141,734 + SMc04331 0.88 -0.2
2,141,776 + -1.0
2,141,777 - +0.7
2,141,891 - +0.2
2,142,416 - SMc04333 0.51 -1.2
2,142,565 + SMc04333 0.75 -0.4
2,142,566 - SMc04333 0.75 +0.7
2,142,566 - SMc04333 0.75 -1.8
2,142,593 - SMc04333 0.79 -0.3
2,142,593 - SMc04333 0.79 +0.3
2,142,649 - SMc04333 0.88 -0.7
2,142,664 + +0.1
2,142,664 + -0.7
2,142,670 + -0.2
2,142,670 + +0.1
2,142,671 - -0.0
2,142,679 - +0.1
2,142,696 + +0.5
2,142,696 + -0.1
2,142,806 + +0.4
2,142,807 - +0.0

Or see this region's nucleotide sequence