Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04126 and SMc04125 are separated by 4 nucleotides SMc04125 and SMc04124 are separated by 3 nucleotides SMc04124 and SMc04123 overlap by 4 nucleotides
SMc04126: SMc04126 - ABC transporter permease, at 149,339 to 150,472
SMc04126
SMc04125: SMc04125 - ABC transporter permease, at 150,477 to 151,448
SMc04125
SMc04124: SMc04124 - cytidine deaminase, at 151,452 to 151,910
SMc04124
SMc04123: SMc04123 - purine nucleoside phosphorylase, at 151,907 to 152,704
SMc04123
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 149.509 kb on + strand, within SMc04126 at 149.509 kb on + strand, within SMc04126 at 149.510 kb on - strand, within SMc04126 at 149.615 kb on + strand, within SMc04126 at 149.616 kb on + strand, within SMc04126 at 149.616 kb on - strand, within SMc04126 at 149.675 kb on + strand, within SMc04126 at 149.675 kb on + strand, within SMc04126 at 149.676 kb on - strand, within SMc04126 at 149.770 kb on + strand, within SMc04126 at 149.770 kb on + strand, within SMc04126 at 149.771 kb on - strand, within SMc04126 at 149.804 kb on - strand, within SMc04126 at 149.822 kb on + strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 149.823 kb on - strand, within SMc04126 at 150.117 kb on + strand, within SMc04126 at 150.924 kb on + strand, within SMc04125 at 150.925 kb on - strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.960 kb on + strand, within SMc04125 at 150.961 kb on - strand, within SMc04125 at 151.003 kb on - strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.197 kb on + strand, within SMc04125 at 151.198 kb on - strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.244 kb on + strand, within SMc04125 at 151.245 kb on - strand, within SMc04125 at 151.362 kb on - strand at 151.362 kb on - strand at 151.426 kb on + strand at 151.432 kb on - strand at 151.490 kb on + strand at 151.490 kb on + strand at 151.490 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.496 kb on + strand at 151.497 kb on - strand at 151.497 kb on - strand at 151.497 kb on - strand at 151.500 kb on + strand, within SMc04124 at 151.501 kb on - strand, within SMc04124 at 151.501 kb on - strand, within SMc04124 at 151.502 kb on + strand, within SMc04124 at 151.626 kb on + strand, within SMc04124 at 151.626 kb on + strand at 151.626 kb on + strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.627 kb on - strand, within SMc04124 at 151.697 kb on + strand, within SMc04124 at 151.698 kb on - strand, within SMc04124 at 151.825 kb on - strand, within SMc04124 at 152.030 kb on + strand, within SMc04123 at 152.031 kb on - strand, within SMc04123 at 152.141 kb on + strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.145 kb on - strand, within SMc04123 at 152.361 kb on - strand, within SMc04123 at 152.361 kb on - strand, within SMc04123 at 152.432 kb on + strand, within SMc04123 at 152.432 kb on + strand, within SMc04123 at 152.433 kb on - strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.434 kb on + strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123 at 152.435 kb on - strand, within SMc04123
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 149,509 + SMc04126 0.15 +0.9 149,509 + SMc04126 0.15 +0.4 149,510 - SMc04126 0.15 +1.2 149,615 + SMc04126 0.24 +0.5 149,616 + SMc04126 0.24 +1.8 149,616 - SMc04126 0.24 +1.0 149,675 + SMc04126 0.30 +1.1 149,675 + SMc04126 0.30 +0.1 149,676 - SMc04126 0.30 -0.3 149,770 + SMc04126 0.38 +2.0 149,770 + SMc04126 0.38 +0.4 149,771 - SMc04126 0.38 +0.3 149,804 - SMc04126 0.41 +0.9 149,822 + SMc04126 0.43 +0.9 149,823 - SMc04126 0.43 +1.0 149,823 - SMc04126 0.43 +1.5 149,823 - SMc04126 0.43 +1.4 150,117 + SMc04126 0.69 +0.9 150,924 + SMc04125 0.46 +0.3 150,925 - SMc04125 0.46 +1.6 150,960 + SMc04125 0.50 +0.8 150,960 + SMc04125 0.50 -1.2 150,961 - SMc04125 0.50 +1.1 151,003 - SMc04125 0.54 +1.0 151,197 + SMc04125 0.74 +0.2 151,197 + SMc04125 0.74 +0.8 151,197 + SMc04125 0.74 +1.8 151,198 - SMc04125 0.74 +0.5 151,244 + SMc04125 0.79 +0.6 151,244 + SMc04125 0.79 +0.4 151,244 + SMc04125 0.79 -0.9 151,245 - SMc04125 0.79 +0.8 151,362 - +0.5 151,362 - +1.2 151,426 + +0.6 151,432 - +1.2 151,490 + +0.4 151,490 + -0.6 151,490 + -1.5 151,496 + -1.3 151,496 + -1.3 151,496 + -1.2 151,496 + -0.5 151,496 + -0.4 151,496 + -0.8 151,496 + -1.2 151,496 + -1.2 151,496 + -1.3 151,497 - -1.3 151,497 - -1.2 151,497 - +0.8 151,500 + SMc04124 0.10 -0.6 151,501 - SMc04124 0.11 -0.5 151,501 - SMc04124 0.11 +0.4 151,502 + SMc04124 0.11 -0.7 151,626 + SMc04124 0.38 -0.8 151,626 + -0.0 151,626 + SMc04124 0.38 +0.5 151,627 - SMc04124 0.38 -0.0 151,627 - SMc04124 0.38 +0.5 151,627 - SMc04124 0.38 +0.2 151,697 + SMc04124 0.53 -0.5 151,698 - SMc04124 0.54 +1.0 151,825 - SMc04124 0.81 -0.6 152,030 + SMc04123 0.15 +0.6 152,031 - SMc04123 0.16 +0.8 152,141 + SMc04123 0.29 +0.2 152,145 - SMc04123 0.30 +0.8 152,145 - SMc04123 0.30 +0.4 152,145 - SMc04123 0.30 +0.7 152,145 - SMc04123 0.30 +0.4 152,361 - SMc04123 0.57 +0.4 152,361 - SMc04123 0.57 +0.3 152,432 + SMc04123 0.66 +1.3 152,432 + SMc04123 0.66 +0.3 152,433 - SMc04123 0.66 -0.7 152,434 + SMc04123 0.66 +0.1 152,434 + SMc04123 0.66 +0.2 152,434 + SMc04123 0.66 +2.0 152,434 + SMc04123 0.66 -2.2 152,435 - SMc04123 0.66 -0.7 152,435 - SMc04123 0.66 -0.0 152,435 - SMc04123 0.66 +0.2 152,435 - SMc04123 0.66 -0.9
Or see this region's nucleotide sequence