Strain Fitness in Sinorhizobium meliloti 1021 around SMc04024
Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,021,299 | + | SMc04023 | 0.29 | +0.5 | |
3,021,300 | - | SMc04023 | 0.29 | -0.7 | |
3,021,414 | + | SMc04023 | 0.42 | -0.0 | |
3,021,414 | + | SMc04023 | 0.42 | +0.2 | |
3,021,415 | - | SMc04023 | 0.42 | +0.3 | |
3,021,723 | - | SMc04023 | 0.77 | +0.4 | |
3,021,803 | + | SMc04023 | 0.86 | +0.5 | |
3,021,803 | + | SMc04023 | 0.86 | -1.1 | |
3,021,803 | + | SMc04023 | 0.86 | -0.5 | |
3,021,803 | + | SMc04023 | 0.86 | +0.8 | |
3,021,803 | + | SMc04023 | 0.86 | -0.5 | |
3,021,804 | - | SMc04023 | 0.86 | +0.3 | |
3,021,804 | - | SMc04023 | 0.86 | +0.0 | |
3,021,975 | - | +0.4 | |||
3,021,975 | - | -0.9 | |||
3,022,113 | + | +0.3 | |||
3,022,113 | + | +2.0 | |||
3,022,354 | - | -3.9 | |||
3,022,453 | - | SMc04024 | 0.18 | -4.0 | |
3,022,485 | + | SMc04024 | 0.21 | -0.6 | |
3,022,486 | - | SMc04024 | 0.21 | -2.5 | |
3,022,510 | - | SMc04024 | 0.23 | -3.5 | |
3,022,666 | - | SMc04024 | 0.36 | -4.7 | |
3,022,695 | + | SMc04024 | 0.38 | -2.9 | |
3,022,695 | + | SMc04024 | 0.38 | -3.4 | |
3,022,840 | - | SMc04024 | 0.50 | -0.9 | |
3,022,840 | - | SMc04024 | 0.50 | -2.9 | |
3,022,884 | - | SMc04024 | 0.53 | -2.7 | |
3,023,002 | - | SMc04024 | 0.63 | -2.2 | |
3,023,166 | + | SMc04024 | 0.77 | -0.6 | |
3,023,417 | + | -2.3 | |||
3,023,418 | - | -3.1 | |||
3,023,449 | - | -2.5 | |||
3,023,572 | + | -2.9 |
Or see this region's nucleotide sequence