Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03995 and SMc03996 are separated by 9 nucleotides SMc03996 and SMc03997 are separated by 99 nucleotides SMc03997 and SMc03998 are separated by 80 nucleotides
SMc03995: SMc03995 - hypothetical protein, at 2,993,348 to 2,994,493
SMc03995
SMc03996: SMc03996 - thiamine-phosphate pyrophosphorylase, at 2,994,503 to 2,995,156
SMc03996
SMc03997: SMc03997 - hypothetical protein, at 2,995,256 to 2,996,038
SMc03997
SMc03998: SMc03998 - transcriptional regulator, at 2,996,119 to 2,996,379
SMc03998
Position (kb)
2994
2995
2996 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2994.740 kb on + strand, within SMc03996 at 2994.741 kb on - strand, within SMc03996 at 2994.741 kb on - strand, within SMc03996 at 2994.772 kb on - strand, within SMc03996 at 2994.772 kb on - strand, within SMc03996 at 2994.944 kb on + strand, within SMc03996 at 2994.945 kb on - strand, within SMc03996 at 2995.026 kb on + strand, within SMc03996 at 2995.026 kb on + strand, within SMc03996 at 2995.050 kb on - strand, within SMc03996 at 2995.099 kb on + strand at 2995.223 kb on - strand at 2995.277 kb on + strand at 2995.278 kb on - strand at 2995.278 kb on - strand at 2995.535 kb on + strand, within SMc03997 at 2995.599 kb on - strand, within SMc03997 at 2995.599 kb on - strand, within SMc03997 at 2995.604 kb on + strand, within SMc03997 at 2995.605 kb on - strand, within SMc03997 at 2995.605 kb on - strand, within SMc03997 at 2995.605 kb on - strand, within SMc03997 at 2995.605 kb on - strand, within SMc03997 at 2995.739 kb on + strand, within SMc03997 at 2995.739 kb on + strand, within SMc03997 at 2995.739 kb on + strand, within SMc03997 at 2995.740 kb on - strand, within SMc03997 at 2995.740 kb on - strand, within SMc03997 at 2995.774 kb on + strand, within SMc03997 at 2995.775 kb on - strand, within SMc03997 at 2995.775 kb on - strand, within SMc03997 at 2995.775 kb on - strand, within SMc03997 at 2995.953 kb on - strand, within SMc03997 at 2995.953 kb on - strand, within SMc03997 at 2995.964 kb on + strand at 2995.964 kb on + strand at 2995.964 kb on + strand at 2995.965 kb on - strand at 2996.022 kb on + strand at 2996.023 kb on - strand at 2996.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 2,994,740 + SMc03996 0.36 -1.8 2,994,741 - SMc03996 0.36 -2.7 2,994,741 - SMc03996 0.36 -3.2 2,994,772 - SMc03996 0.41 -1.2 2,994,772 - SMc03996 0.41 -2.7 2,994,944 + SMc03996 0.67 -1.5 2,994,945 - SMc03996 0.68 -2.1 2,995,026 + SMc03996 0.80 -2.9 2,995,026 + SMc03996 0.80 -4.9 2,995,050 - SMc03996 0.84 -3.2 2,995,099 + -0.7 2,995,223 - -0.3 2,995,277 + -0.7 2,995,278 - +0.2 2,995,278 - -1.3 2,995,535 + SMc03997 0.36 +0.7 2,995,599 - SMc03997 0.44 +0.5 2,995,599 - SMc03997 0.44 -0.3 2,995,604 + SMc03997 0.44 +0.2 2,995,605 - SMc03997 0.45 -0.7 2,995,605 - SMc03997 0.45 +0.5 2,995,605 - SMc03997 0.45 +0.1 2,995,605 - SMc03997 0.45 -0.1 2,995,739 + SMc03997 0.62 +1.2 2,995,739 + SMc03997 0.62 -0.0 2,995,739 + SMc03997 0.62 +0.4 2,995,740 - SMc03997 0.62 -0.5 2,995,740 - SMc03997 0.62 +0.8 2,995,774 + SMc03997 0.66 -0.2 2,995,775 - SMc03997 0.66 -0.4 2,995,775 - SMc03997 0.66 +0.4 2,995,775 - SMc03997 0.66 +0.4 2,995,953 - SMc03997 0.89 +0.1 2,995,953 - SMc03997 0.89 +0.0 2,995,964 + +0.8 2,995,964 + -0.3 2,995,964 + +0.5 2,995,965 - +0.5 2,996,022 + -0.8 2,996,023 - -0.2 2,996,023 - +0.6
Or see this region's nucleotide sequence