Strain Fitness in Sinorhizobium meliloti 1021 around SMc03963

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03961 and SMc04081 overlap by 4 nucleotidesSMc04081 and SMc03963 overlap by 4 nucleotidesSMc03963 and SMc03964 are separated by 139 nucleotides SMc03961: SMc03961 - sulfolipid (UDP-sulfoquinovose) biosynthesis protein, at 2,954,817 to 2,956,037 SMc03961 SMc04081: SMc04081 - glycosyl transferase (sulfolipid biosynthesis) protein, at 2,956,034 to 2,956,909 SMc04081 SMc03963: SMc03963 - sulfolipid biosynthesis protein, at 2,956,906 to 2,957,832 SMc03963 SMc03964: SMc03964 - hypothetical protein, at 2,957,972 to 2,958,874 SMc03964 Position (kb) 2956 2957 2958Strain fitness (log2 ratio) -2 -1 0 1 2at 2956.128 kb on - strand, within SMc04081at 2956.186 kb on + strand, within SMc04081at 2956.186 kb on + strand, within SMc04081at 2956.186 kb on + strand, within SMc04081at 2956.393 kb on - strand, within SMc04081at 2956.393 kb on - strand, within SMc04081at 2956.511 kb on + strand, within SMc04081at 2956.511 kb on + strand, within SMc04081at 2956.512 kb on - strand, within SMc04081at 2956.703 kb on + strand, within SMc04081at 2956.703 kb on + strand, within SMc04081at 2956.704 kb on - strand, within SMc04081at 2956.704 kb on - strand, within SMc04081at 2956.704 kb on - strand, within SMc04081at 2956.704 kb on - strand, within SMc04081at 2956.766 kb on + strand, within SMc04081at 2956.767 kb on - strand, within SMc04081at 2957.097 kb on + strand, within SMc03963at 2957.098 kb on - strand, within SMc03963at 2957.098 kb on - strand, within SMc03963at 2957.101 kb on + strand, within SMc03963at 2957.101 kb on + strand, within SMc03963at 2957.102 kb on - strand, within SMc03963at 2957.102 kb on - strand, within SMc03963at 2957.104 kb on + strand, within SMc03963at 2957.105 kb on - strand, within SMc03963at 2957.332 kb on + strand, within SMc03963at 2957.333 kb on - strand, within SMc03963at 2957.342 kb on + strand, within SMc03963at 2957.422 kb on + strand, within SMc03963at 2957.476 kb on + strand, within SMc03963at 2957.476 kb on + strand, within SMc03963at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.087 kb on + strand, within SMc03964at 2958.087 kb on + strand, within SMc03964at 2958.088 kb on - strand, within SMc03964at 2958.171 kb on - strand, within SMc03964at 2958.230 kb on + strand, within SMc03964at 2958.230 kb on + strand, within SMc03964at 2958.567 kb on + strand, within SMc03964at 2958.568 kb on - strand, within SMc03964at 2958.568 kb on - strand, within SMc03964at 2958.598 kb on - strand, within SMc03964at 2958.650 kb on + strand, within SMc03964at 2958.651 kb on - strand, within SMc03964at 2958.651 kb on - strand, within SMc03964at 2958.759 kb on + strand, within SMc03964at 2958.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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2,956,128 - SMc04081 0.11 +1.3
2,956,186 + SMc04081 0.17 +0.0
2,956,186 + SMc04081 0.17 +0.3
2,956,186 + SMc04081 0.17 +0.3
2,956,393 - SMc04081 0.41 -0.1
2,956,393 - SMc04081 0.41 -0.0
2,956,511 + SMc04081 0.54 -0.3
2,956,511 + SMc04081 0.54 +0.2
2,956,512 - SMc04081 0.55 -0.1
2,956,703 + SMc04081 0.76 +0.3
2,956,703 + SMc04081 0.76 -0.1
2,956,704 - SMc04081 0.76 +0.2
2,956,704 - SMc04081 0.76 +0.3
2,956,704 - SMc04081 0.76 +0.4
2,956,704 - SMc04081 0.76 +0.0
2,956,766 + SMc04081 0.84 +0.3
2,956,767 - SMc04081 0.84 +0.5
2,957,097 + SMc03963 0.21 +0.8
2,957,098 - SMc03963 0.21 +0.9
2,957,098 - SMc03963 0.21 +2.2
2,957,101 + SMc03963 0.21 +0.1
2,957,101 + SMc03963 0.21 +0.3
2,957,102 - SMc03963 0.21 +0.2
2,957,102 - SMc03963 0.21 +0.3
2,957,104 + SMc03963 0.21 -0.3
2,957,105 - SMc03963 0.21 -1.3
2,957,332 + SMc03963 0.46 +0.1
2,957,333 - SMc03963 0.46 -0.0
2,957,342 + SMc03963 0.47 +0.2
2,957,422 + SMc03963 0.56 +0.2
2,957,476 + SMc03963 0.61 -2.0
2,957,476 + SMc03963 0.61 -0.1
2,958,080 - SMc03964 0.12 -0.5
2,958,080 - SMc03964 0.12 -0.5
2,958,080 - SMc03964 0.12 +0.1
2,958,080 - SMc03964 0.12 +1.1
2,958,087 + SMc03964 0.13 -0.5
2,958,087 + SMc03964 0.13 +0.4
2,958,088 - SMc03964 0.13 -0.3
2,958,171 - SMc03964 0.22 +0.2
2,958,230 + SMc03964 0.29 +0.5
2,958,230 + SMc03964 0.29 -0.8
2,958,567 + SMc03964 0.66 -0.5
2,958,568 - SMc03964 0.66 -0.4
2,958,568 - SMc03964 0.66 +1.2
2,958,598 - SMc03964 0.69 -0.2
2,958,650 + SMc03964 0.75 -0.1
2,958,651 - SMc03964 0.75 +0.3
2,958,651 - SMc03964 0.75 -0.9
2,958,759 + SMc03964 0.87 +0.8
2,958,805 - +0.7

Or see this region's nucleotide sequence