Strain Fitness in Sinorhizobium meliloti 1021 around SMc03849

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03847 and SMc03848 overlap by 4 nucleotidesSMc03848 and SMc03849 are separated by 59 nucleotidesSMc03849 and SMc03850 overlap by 4 nucleotidesSMc03850 and SMc03851 overlap by 4 nucleotidesSMc03851 and SMc03852 are separated by 158 nucleotides SMc03847: SMc03847 - cytochrome c biogenesis protein CcmA, at 3,513,863 to 3,514,486 SMc03847 SMc03848: SMc03848 - heme exporter B (cytochrome C-type biogenesis protein) transmembrane, at 3,514,483 to 3,515,142 SMc03848 SMc03849: SMc03849 - heme exporter C (cytochrome C-type biogenesis protein) transmembrane, at 3,515,202 to 3,515,972 SMc03849 SMc03850: SMc03850 - heme exporter D (cytochrome C-type biogenesis protein) transmembrane, at 3,515,969 to 3,516,145 SMc03850 SMc03851: SMc03851 - thiol:disulfide interchange protein (cytochrome C biogenesis protein), at 3,516,142 to 3,516,750 SMc03851 SMc03852: SMc03852 - hypothetical protein, at 3,516,909 to 3,517,502 SMc03852 Position (kb) 3515 3516Strain fitness (log2 ratio) -3 -2 -1 0 1at 3515.063 kb on + strand, within SMc03848at 3515.158 kb on + strandat 3515.631 kb on + strand, within SMc03849at 3515.785 kb on + strand, within SMc03849at 3515.963 kb on + strandat 3515.963 kb on + strandat 3515.987 kb on + strand, within SMc03850at 3515.988 kb on - strand, within SMc03850at 3516.511 kb on + strand, within SMc03851at 3516.748 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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3,515,063 + SMc03848 0.88 -1.8
3,515,158 + -0.4
3,515,631 + SMc03849 0.56 +1.2
3,515,785 + SMc03849 0.76 -3.3
3,515,963 + -0.4
3,515,963 + -0.7
3,515,987 + SMc03850 0.10 -0.8
3,515,988 - SMc03850 0.11 -2.1
3,516,511 + SMc03851 0.61 -1.6
3,516,748 + -0.6

Or see this region's nucleotide sequence