Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03226 and SMc03227 are separated by 14 nucleotides SMc03227 and SMc03228 are separated by 6 nucleotides SMc03228 and SMc03229 are separated by 17 nucleotides SMc03229 and SMc03230 are separated by 10 nucleotides
SMc03226: SMc03226 - hypothetical protein, at 3,335,825 to 3,336,481
SMc03226
SMc03227: SMc03227 - hypothetical protein, at 3,336,496 to 3,336,927
SMc03227
SMc03228: SMc03228 - YciI-like protein, at 3,336,934 to 3,337,227
SMc03228
SMc03229: SMc03229 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 3,337,245 to 3,338,246
SMc03229
SMc03230: SMc03230 - DNA-binding/iron metalloprotein/AP endonuclease, at 3,338,257 to 3,339,339
SMc03230
Position (kb)
3337
3338
3339 Strain fitness (log2 ratio)
-2
-1
0
1 at 3336.484 kb on + strand at 3336.484 kb on + strand at 3336.585 kb on + strand, within SMc03227 at 3336.773 kb on + strand, within SMc03227 at 3336.775 kb on + strand, within SMc03227 at 3336.828 kb on - strand, within SMc03227 at 3336.965 kb on + strand, within SMc03228 at 3336.965 kb on + strand, within SMc03228 at 3336.965 kb on + strand, within SMc03228 at 3336.966 kb on - strand, within SMc03228 at 3336.966 kb on - strand, within SMc03228 at 3336.966 kb on - strand, within SMc03228 at 3337.148 kb on + strand, within SMc03228 at 3337.954 kb on + strand, within SMc03229 at 3337.959 kb on - strand, within SMc03229 at 3338.042 kb on - strand, within SMc03229
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 3,336,484 + +0.0 3,336,484 + -0.1 3,336,585 + SMc03227 0.21 -0.6 3,336,773 + SMc03227 0.64 -0.1 3,336,775 + SMc03227 0.65 -1.0 3,336,828 - SMc03227 0.77 +0.4 3,336,965 + SMc03228 0.11 -1.0 3,336,965 + SMc03228 0.11 -0.6 3,336,965 + SMc03228 0.11 -1.8 3,336,966 - SMc03228 0.11 -1.2 3,336,966 - SMc03228 0.11 +0.5 3,336,966 - SMc03228 0.11 -0.9 3,337,148 + SMc03228 0.73 -0.5 3,337,954 + SMc03229 0.71 -2.2 3,337,959 - SMc03229 0.71 -1.8 3,338,042 - SMc03229 0.80 -2.1
Or see this region's nucleotide sequence