Strain Fitness in Sinorhizobium meliloti 1021 around SMc03205

Experiment: Fusidic 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03204 and SMc03205 are separated by 384 nucleotidesSMc03205 and SMc03206 are separated by 163 nucleotidesSMc03206 and SMc03207 are separated by 11 nucleotides SMc03204: SMc03204 - Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data), at 3,168,434 to 3,169,828 SMc03204 SMc03205: SMc03205 - formyltetrahydrofolate deformylase, at 3,170,213 to 3,171,097 SMc03205 SMc03206: SMc03206 - maleylacetoacetate isomerase (glutathione transferase zeta 1) protein, at 3,171,261 to 3,171,914 SMc03206 SMc03207: SMc03207 - aromatic amino acid degradation protein, at 3,171,926 to 3,172,942 SMc03207 Position (kb) 3170 3171 3172Strain fitness (log2 ratio) -1 0 1 2at 3169.353 kb on - strand, within SMc03204at 3169.442 kb on - strand, within SMc03204at 3169.752 kb on + strandat 3169.752 kb on + strandat 3169.752 kb on + strandat 3169.753 kb on - strandat 3170.020 kb on - strandat 3170.143 kb on - strandat 3170.165 kb on + strandat 3170.169 kb on - strandat 3170.185 kb on + strandat 3170.186 kb on - strandat 3170.236 kb on - strandat 3170.788 kb on - strand, within SMc03205at 3171.009 kb on + strandat 3171.009 kb on + strandat 3171.009 kb on + strandat 3171.010 kb on - strandat 3171.010 kb on - strandat 3171.010 kb on - strandat 3171.010 kb on - strandat 3171.010 kb on - strandat 3171.087 kb on + strandat 3171.087 kb on + strandat 3171.087 kb on + strandat 3171.088 kb on - strandat 3171.088 kb on - strandat 3171.088 kb on - strandat 3171.139 kb on - strandat 3171.262 kb on + strandat 3171.324 kb on + strandat 3171.325 kb on - strandat 3171.379 kb on + strand, within SMc03206at 3171.379 kb on + strand, within SMc03206at 3171.380 kb on - strand, within SMc03206at 3171.380 kb on - strand, within SMc03206at 3171.461 kb on + strand, within SMc03206at 3171.461 kb on + strand, within SMc03206at 3171.461 kb on + strand, within SMc03206at 3171.462 kb on - strand, within SMc03206at 3171.462 kb on - strand, within SMc03206at 3171.462 kb on - strand, within SMc03206at 3171.601 kb on + strand, within SMc03206at 3171.602 kb on - strand, within SMc03206at 3171.602 kb on - strand, within SMc03206at 3171.602 kb on - strand, within SMc03206at 3171.679 kb on + strand, within SMc03206at 3171.680 kb on - strand, within SMc03206at 3171.680 kb on - strand, within SMc03206at 3171.853 kb on + strandat 3171.854 kb on - strandat 3171.874 kb on + strandat 3171.874 kb on + strandat 3171.939 kb on + strandat 3172.092 kb on + strand, within SMc03207

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
remove
3,169,353 - SMc03204 0.66 -0.6
3,169,442 - SMc03204 0.72 +0.0
3,169,752 + -0.1
3,169,752 + +0.4
3,169,752 + -0.3
3,169,753 - +0.8
3,170,020 - -0.4
3,170,143 - +0.5
3,170,165 + +0.1
3,170,169 - +2.0
3,170,185 + -0.5
3,170,186 - +0.2
3,170,236 - +0.2
3,170,788 - SMc03205 0.65 -0.6
3,171,009 + +0.2
3,171,009 + -0.1
3,171,009 + +0.5
3,171,010 - +0.4
3,171,010 - +0.4
3,171,010 - -0.2
3,171,010 - +0.5
3,171,010 - -0.6
3,171,087 + +0.4
3,171,087 + -1.5
3,171,087 + +1.0
3,171,088 - +2.6
3,171,088 - +0.5
3,171,088 - -0.0
3,171,139 - +0.1
3,171,262 + -0.7
3,171,324 + +0.1
3,171,325 - -0.0
3,171,379 + SMc03206 0.18 +0.1
3,171,379 + SMc03206 0.18 +0.0
3,171,380 - SMc03206 0.18 -0.3
3,171,380 - SMc03206 0.18 -0.0
3,171,461 + SMc03206 0.31 +0.4
3,171,461 + SMc03206 0.31 -0.7
3,171,461 + SMc03206 0.31 -0.2
3,171,462 - SMc03206 0.31 +0.1
3,171,462 - SMc03206 0.31 +2.0
3,171,462 - SMc03206 0.31 -0.4
3,171,601 + SMc03206 0.52 +0.6
3,171,602 - SMc03206 0.52 +0.8
3,171,602 - SMc03206 0.52 +0.1
3,171,602 - SMc03206 0.52 +0.1
3,171,679 + SMc03206 0.64 +0.2
3,171,680 - SMc03206 0.64 -1.0
3,171,680 - SMc03206 0.64 -0.3
3,171,853 + +0.8
3,171,854 - -0.3
3,171,874 + +1.2
3,171,874 + +0.3
3,171,939 + +0.1
3,172,092 + SMc03207 0.16 -0.6

Or see this region's nucleotide sequence