Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03179 and SMc03180 overlap by 1 nucleotides SMc03180 and SMc03181 overlap by 8 nucleotides
SMc03179: SMc03179 - monovalent cation/H+ antiporter subunit A, at 3,143,729 to 3,146,728
SMc03179
SMc03180: SMc03180 - monovalent cation/H+ antiporter subunit C, at 3,146,728 to 3,147,075
SMc03180
SMc03181: SMc03181 - monovalent cation/H+ antiporter subunit D, at 3,147,068 to 3,148,687
SMc03181
Position (kb)
3146
3147
3148 Strain fitness (log2 ratio)
-2
-1
0
1 at 3145.753 kb on + strand, within SMc03179 at 3145.754 kb on - strand, within SMc03179 at 3145.754 kb on - strand, within SMc03179 at 3145.967 kb on + strand, within SMc03179 at 3146.259 kb on - strand, within SMc03179 at 3146.402 kb on + strand, within SMc03179 at 3146.402 kb on + strand, within SMc03179 at 3146.402 kb on + strand, within SMc03179 at 3146.403 kb on - strand, within SMc03179 at 3146.403 kb on - strand, within SMc03179 at 3146.403 kb on - strand, within SMc03179 at 3146.403 kb on - strand, within SMc03179 at 3146.404 kb on + strand, within SMc03179 at 3146.404 kb on + strand, within SMc03179 at 3146.404 kb on + strand, within SMc03179 at 3146.405 kb on - strand, within SMc03179 at 3146.405 kb on - strand, within SMc03179 at 3146.546 kb on + strand at 3146.721 kb on + strand at 3146.722 kb on - strand at 3146.727 kb on - strand at 3146.779 kb on + strand, within SMc03180 at 3146.780 kb on - strand, within SMc03180 at 3146.930 kb on - strand, within SMc03180 at 3147.272 kb on + strand, within SMc03181 at 3147.575 kb on + strand, within SMc03181 at 3147.575 kb on + strand, within SMc03181 at 3147.576 kb on - strand, within SMc03181 at 3147.576 kb on - strand, within SMc03181 at 3147.576 kb on - strand, within SMc03181 at 3147.577 kb on + strand, within SMc03181 at 3147.577 kb on + strand, within SMc03181 at 3147.633 kb on - strand, within SMc03181 at 3147.794 kb on + strand, within SMc03181 at 3147.854 kb on + strand, within SMc03181 at 3147.854 kb on + strand, within SMc03181 at 3147.854 kb on + strand, within SMc03181 at 3147.855 kb on - strand, within SMc03181 at 3147.975 kb on + strand, within SMc03181 at 3148.023 kb on + strand, within SMc03181
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 3,145,753 + SMc03179 0.67 -0.6 3,145,754 - SMc03179 0.68 -0.8 3,145,754 - SMc03179 0.68 -2.5 3,145,967 + SMc03179 0.75 -0.9 3,146,259 - SMc03179 0.84 -2.2 3,146,402 + SMc03179 0.89 -1.2 3,146,402 + SMc03179 0.89 -0.2 3,146,402 + SMc03179 0.89 -1.9 3,146,403 - SMc03179 0.89 -1.5 3,146,403 - SMc03179 0.89 -0.9 3,146,403 - SMc03179 0.89 -2.1 3,146,403 - SMc03179 0.89 -2.6 3,146,404 + SMc03179 0.89 +0.3 3,146,404 + SMc03179 0.89 -0.8 3,146,404 + SMc03179 0.89 -0.2 3,146,405 - SMc03179 0.89 -1.5 3,146,405 - SMc03179 0.89 -0.4 3,146,546 + -0.1 3,146,721 + +0.3 3,146,722 - +0.1 3,146,727 - -1.3 3,146,779 + SMc03180 0.15 -0.8 3,146,780 - SMc03180 0.15 -1.2 3,146,930 - SMc03180 0.58 -1.4 3,147,272 + SMc03181 0.13 -0.8 3,147,575 + SMc03181 0.31 -2.7 3,147,575 + SMc03181 0.31 -1.2 3,147,576 - SMc03181 0.31 +0.2 3,147,576 - SMc03181 0.31 -0.9 3,147,576 - SMc03181 0.31 -1.4 3,147,577 + SMc03181 0.31 -1.0 3,147,577 + SMc03181 0.31 -1.6 3,147,633 - SMc03181 0.35 -0.5 3,147,794 + SMc03181 0.45 -1.7 3,147,854 + SMc03181 0.49 -0.2 3,147,854 + SMc03181 0.49 -1.2 3,147,854 + SMc03181 0.49 -2.0 3,147,855 - SMc03181 0.49 -1.3 3,147,975 + SMc03181 0.56 -1.0 3,148,023 + SMc03181 0.59 -0.9
Or see this region's nucleotide sequence