Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02891 and SMc02892 are separated by 86 nucleotides SMc02892 and SMc02893 are separated by 130 nucleotides
SMc02891: SMc02891 - oxidoreductase transmembrane protein, at 247,566 to 248,726
SMc02891
SMc02892: SMc02892 - transporter, at 248,813 to 250,291
SMc02892
SMc02893: SMc02893 - transcriptional regulator, at 250,422 to 251,348
SMc02893
Position (kb) 248
249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 247.815 kb on + strand, within SMc02891 at 247.816 kb on - strand, within SMc02891 at 247.816 kb on - strand, within SMc02891 at 247.817 kb on + strand, within SMc02891 at 247.817 kb on + strand, within SMc02891 at 247.817 kb on + strand, within SMc02891 at 247.818 kb on + strand, within SMc02891 at 247.818 kb on - strand, within SMc02891 at 247.818 kb on - strand, within SMc02891 at 247.821 kb on + strand, within SMc02891 at 247.822 kb on - strand, within SMc02891 at 247.822 kb on - strand, within SMc02891 at 247.822 kb on - strand, within SMc02891 at 247.822 kb on - strand, within SMc02891 at 247.879 kb on + strand, within SMc02891 at 248.184 kb on + strand, within SMc02891 at 248.468 kb on - strand, within SMc02891 at 248.724 kb on + strand at 248.725 kb on - strand at 248.809 kb on + strand at 248.810 kb on - strand at 248.818 kb on + strand at 248.819 kb on - strand at 248.831 kb on + strand at 249.110 kb on - strand, within SMc02892 at 249.375 kb on + strand, within SMc02892 at 249.375 kb on + strand, within SMc02892 at 249.376 kb on - strand, within SMc02892 at 249.509 kb on + strand, within SMc02892 at 249.600 kb on + strand, within SMc02892 at 249.600 kb on + strand, within SMc02892 at 250.080 kb on + strand, within SMc02892 at 250.081 kb on - strand, within SMc02892 at 250.411 kb on - strand at 250.411 kb on - strand at 250.411 kb on - strand at 251.054 kb on + strand, within SMc02893 at 251.054 kb on + strand, within SMc02893 at 251.055 kb on - strand, within SMc02893 at 251.091 kb on - strand, within SMc02893 at 251.099 kb on - strand, within SMc02893
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 247,815 + SMc02891 0.21 +0.9 247,816 - SMc02891 0.22 +0.7 247,816 - SMc02891 0.22 +0.5 247,817 + SMc02891 0.22 -0.8 247,817 + SMc02891 0.22 +0.3 247,817 + SMc02891 0.22 -0.2 247,818 + SMc02891 0.22 -1.2 247,818 - SMc02891 0.22 +1.0 247,818 - SMc02891 0.22 -2.1 247,821 + SMc02891 0.22 -0.2 247,822 - SMc02891 0.22 -0.4 247,822 - SMc02891 0.22 +0.2 247,822 - SMc02891 0.22 -0.1 247,822 - SMc02891 0.22 +0.4 247,879 + SMc02891 0.27 -1.4 248,184 + SMc02891 0.53 +0.3 248,468 - SMc02891 0.78 +1.3 248,724 + +0.5 248,725 - -0.2 248,809 + +0.3 248,810 - -0.2 248,818 + +0.8 248,819 - -1.3 248,831 + -0.2 249,110 - SMc02892 0.20 +0.0 249,375 + SMc02892 0.38 +0.7 249,375 + SMc02892 0.38 +0.2 249,376 - SMc02892 0.38 +1.1 249,509 + SMc02892 0.47 -0.7 249,600 + SMc02892 0.53 -0.2 249,600 + SMc02892 0.53 -0.0 250,080 + SMc02892 0.86 +3.1 250,081 - SMc02892 0.86 -0.2 250,411 - +0.3 250,411 - +0.4 250,411 - -0.3 251,054 + SMc02893 0.68 +1.5 251,054 + SMc02893 0.68 -0.0 251,055 - SMc02893 0.68 -0.3 251,091 - SMc02893 0.72 -0.9 251,099 - SMc02893 0.73 -0.4
Or see this region's nucleotide sequence