Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02870 and SMc02871 overlap by 4 nucleotides SMc02871 and SMc02872 are separated by 12 nucleotides
SMc02870: SMc02870 - oxidoreductase, at 225,791 to 226,855
SMc02870
SMc02871: SMc02871 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 <small>(from data)</small>, at 226,852 to 227,691
SMc02871
SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 <small>(from data)</small>, at 227,704 to 228,651
SMc02872
Position (kb) 226
227
228 Strain fitness (log2 ratio) -1
0
1
2
3 at 226.171 kb on - strand, within SMc02870 at 226.216 kb on - strand, within SMc02870 at 226.221 kb on + strand, within SMc02870 at 226.221 kb on + strand, within SMc02870 at 226.222 kb on - strand, within SMc02870 at 226.314 kb on + strand, within SMc02870 at 226.314 kb on + strand, within SMc02870 at 226.315 kb on - strand, within SMc02870 at 226.419 kb on + strand, within SMc02870 at 226.419 kb on + strand, within SMc02870 at 226.420 kb on - strand, within SMc02870 at 226.483 kb on + strand, within SMc02870 at 226.483 kb on + strand, within SMc02870 at 226.632 kb on + strand, within SMc02870 at 226.633 kb on - strand, within SMc02870 at 226.633 kb on - strand, within SMc02870 at 226.779 kb on + strand at 226.804 kb on + strand at 226.805 kb on - strand at 226.907 kb on + strand at 226.907 kb on + strand at 227.219 kb on - strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.247 kb on - strand, within SMc02871 at 227.272 kb on - strand, within SMc02871 at 227.354 kb on + strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.474 kb on + strand, within SMc02871 at 227.631 kb on - strand at 227.631 kb on - strand at 227.696 kb on + strand at 227.697 kb on - strand at 227.697 kb on - strand at 227.705 kb on + strand at 227.706 kb on - strand at 227.706 kb on - strand at 227.734 kb on + strand at 227.735 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.912 kb on + strand, within SMc02872 at 227.913 kb on - strand, within SMc02872 at 227.913 kb on - strand at 227.913 kb on - strand, within SMc02872 at 228.080 kb on + strand, within SMc02872 at 228.105 kb on + strand, within SMc02872 at 228.106 kb on - strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.291 kb on + strand, within SMc02872 at 228.302 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.507 kb on - strand, within SMc02872 at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.627 kb on - strand at 228.627 kb on - strand at 228.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 226,171 - SMc02870 0.36 +0.1 226,216 - SMc02870 0.40 -0.2 226,221 + SMc02870 0.40 +0.2 226,221 + SMc02870 0.40 -0.2 226,222 - SMc02870 0.40 +0.3 226,314 + SMc02870 0.49 +0.6 226,314 + SMc02870 0.49 -0.3 226,315 - SMc02870 0.49 -0.5 226,419 + SMc02870 0.59 +0.5 226,419 + SMc02870 0.59 +0.4 226,420 - SMc02870 0.59 -0.6 226,483 + SMc02870 0.65 -0.7 226,483 + SMc02870 0.65 +0.4 226,632 + SMc02870 0.79 +0.1 226,633 - SMc02870 0.79 -1.3 226,633 - SMc02870 0.79 -0.3 226,779 + -0.7 226,804 + -0.2 226,805 - -1.4 226,907 + +0.4 226,907 + +0.2 227,219 - SMc02871 0.44 +0.6 227,246 + SMc02871 0.47 +1.3 227,246 + SMc02871 0.47 -0.2 227,246 + SMc02871 0.47 +0.4 227,247 - SMc02871 0.47 +0.5 227,272 - SMc02871 0.50 +0.6 227,354 + SMc02871 0.60 +0.6 227,355 - SMc02871 0.60 -0.1 227,355 - SMc02871 0.60 -0.2 227,355 - SMc02871 0.60 +0.4 227,474 + SMc02871 0.74 -0.2 227,631 - -0.5 227,631 - -0.1 227,696 + -0.1 227,697 - -0.2 227,697 - -1.2 227,705 + +0.4 227,706 - +0.2 227,706 - -0.2 227,734 + -0.0 227,735 - -0.5 227,748 - +0.3 227,748 - +0.1 227,748 - -0.2 227,912 + SMc02872 0.22 +0.2 227,913 - SMc02872 0.22 -0.1 227,913 - +0.5 227,913 - SMc02872 0.22 +0.2 228,080 + SMc02872 0.40 +0.0 228,105 + SMc02872 0.42 +0.7 228,106 - SMc02872 0.42 -0.5 228,107 + SMc02872 0.43 +0.6 228,107 + SMc02872 0.43 +0.8 228,107 + SMc02872 0.43 -0.0 228,108 - SMc02872 0.43 +0.2 228,108 - SMc02872 0.43 +0.1 228,206 + SMc02872 0.53 -0.0 228,206 + SMc02872 0.53 -0.0 228,207 - SMc02872 0.53 +0.4 228,207 - SMc02872 0.53 +1.1 228,291 + SMc02872 0.62 +0.5 228,302 + SMc02872 0.63 -0.3 228,506 + SMc02872 0.85 +0.4 228,506 + SMc02872 0.85 +0.3 228,506 + SMc02872 0.85 +0.1 228,507 - SMc02872 0.85 +0.1 228,626 + -0.2 228,626 + -0.1 228,626 + +0.9 228,626 + -0.5 228,627 - +3.1 228,627 - +0.0 228,627 - +1.9
Or see this region's nucleotide sequence