Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02852 and SMc02853 are separated by 363 nucleotides SMc02853 and SMc02854 are separated by 66 nucleotides SMc02854 and SMc02855 are separated by 98 nucleotides
SMc02852: SMc02852 - hypothetical protein, at 202,498 to 203,892
SMc02852
SMc02853: SMc02853 - hypothetical protein, at 204,256 to 205,203
SMc02853
SMc02854: SMc02854 - signal peptide protein, at 205,270 to 205,761
SMc02854
SMc02855: SMc02855 - hypothetical protein, at 205,860 to 206,783
SMc02855
Position (kb) 204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.304 kb on + strand, within SMc02852 at 203.304 kb on + strand, within SMc02852 at 203.304 kb on + strand, within SMc02852 at 203.305 kb on - strand, within SMc02852 at 203.305 kb on - strand, within SMc02852 at 203.446 kb on + strand, within SMc02852 at 203.449 kb on - strand, within SMc02852 at 203.449 kb on - strand, within SMc02852 at 203.557 kb on + strand, within SMc02852 at 203.557 kb on + strand, within SMc02852 at 203.558 kb on - strand, within SMc02852 at 203.890 kb on + strand at 203.891 kb on - strand at 203.912 kb on + strand at 203.984 kb on - strand at 204.112 kb on + strand at 204.113 kb on - strand at 204.274 kb on + strand at 204.274 kb on + strand at 204.275 kb on - strand at 204.523 kb on + strand, within SMc02853 at 204.524 kb on - strand, within SMc02853 at 204.839 kb on + strand, within SMc02853 at 204.839 kb on + strand, within SMc02853 at 204.919 kb on + strand, within SMc02853 at 204.919 kb on + strand, within SMc02853 at 204.920 kb on - strand, within SMc02853 at 204.952 kb on + strand, within SMc02853 at 204.953 kb on - strand, within SMc02853 at 204.953 kb on - strand, within SMc02853 at 204.953 kb on - strand, within SMc02853 at 205.111 kb on + strand at 205.201 kb on + strand at 205.201 kb on + strand at 205.201 kb on + strand at 205.201 kb on + strand at 205.218 kb on + strand at 205.218 kb on + strand at 205.218 kb on + strand at 205.218 kb on + strand at 205.240 kb on + strand at 205.350 kb on - strand, within SMc02854 at 205.400 kb on + strand, within SMc02854 at 205.469 kb on + strand, within SMc02854 at 205.469 kb on + strand, within SMc02854 at 205.469 kb on + strand, within SMc02854 at 205.470 kb on - strand, within SMc02854 at 205.470 kb on - strand, within SMc02854 at 205.589 kb on + strand, within SMc02854 at 205.608 kb on - strand, within SMc02854 at 205.608 kb on - strand, within SMc02854 at 205.608 kb on - strand, within SMc02854 at 205.632 kb on - strand, within SMc02854 at 205.632 kb on - strand, within SMc02854 at 205.677 kb on - strand, within SMc02854 at 205.761 kb on + strand at 205.762 kb on - strand at 205.762 kb on - strand at 205.762 kb on - strand at 206.027 kb on + strand at 206.027 kb on + strand, within SMc02855 at 206.027 kb on + strand, within SMc02855 at 206.081 kb on - strand, within SMc02855 at 206.081 kb on - strand, within SMc02855
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 203,304 + SMc02852 0.58 +0.1 203,304 + SMc02852 0.58 -1.1 203,304 + SMc02852 0.58 +0.0 203,305 - SMc02852 0.58 -0.0 203,305 - SMc02852 0.58 +0.0 203,446 + SMc02852 0.68 -0.9 203,449 - SMc02852 0.68 +1.8 203,449 - SMc02852 0.68 +0.5 203,557 + SMc02852 0.76 -1.3 203,557 + SMc02852 0.76 +0.7 203,558 - SMc02852 0.76 +0.9 203,890 + +0.2 203,891 - +0.8 203,912 + +0.3 203,984 - -1.1 204,112 + -0.6 204,113 - -0.6 204,274 + -1.9 204,274 + +1.5 204,275 - -1.1 204,523 + SMc02853 0.28 -2.5 204,524 - SMc02853 0.28 -0.2 204,839 + SMc02853 0.61 -0.2 204,839 + SMc02853 0.61 -1.2 204,919 + SMc02853 0.70 -0.8 204,919 + SMc02853 0.70 -0.7 204,920 - SMc02853 0.70 +0.9 204,952 + SMc02853 0.73 -0.8 204,953 - SMc02853 0.74 -1.2 204,953 - SMc02853 0.74 -1.5 204,953 - SMc02853 0.74 -0.9 205,111 + -1.1 205,201 + -0.2 205,201 + -1.0 205,201 + +1.5 205,201 + -0.2 205,218 + +0.5 205,218 + -0.4 205,218 + -0.1 205,218 + +0.2 205,240 + +0.3 205,350 - SMc02854 0.16 -0.3 205,400 + SMc02854 0.26 +0.2 205,469 + SMc02854 0.40 -0.0 205,469 + SMc02854 0.40 +0.1 205,469 + SMc02854 0.40 -0.3 205,470 - SMc02854 0.41 -1.0 205,470 - SMc02854 0.41 +0.1 205,589 + SMc02854 0.65 -0.4 205,608 - SMc02854 0.69 +0.3 205,608 - SMc02854 0.69 -0.0 205,608 - SMc02854 0.69 -0.4 205,632 - SMc02854 0.74 -0.1 205,632 - SMc02854 0.74 -0.3 205,677 - SMc02854 0.83 +0.4 205,761 + +0.3 205,762 - -0.9 205,762 - -0.5 205,762 - +1.5 206,027 + +1.1 206,027 + SMc02855 0.18 -1.1 206,027 + SMc02855 0.18 -0.6 206,081 - SMc02855 0.24 -0.2 206,081 - SMc02855 0.24 -0.2
Or see this region's nucleotide sequence