Strain Fitness in Sinorhizobium meliloti 1021 around SMc02652

Experiment: Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02654 and SMc02653 are separated by 159 nucleotidesSMc02653 and SMc02652 overlap by 1 nucleotidesSMc02652 and SMc02651 overlap by 4 nucleotidesSMc02651 and SMc02650 are separated by 12 nucleotides SMc02654: SMc02654 - 4'-phosphopantetheinyl transferase, at 1,168,355 to 1,168,774 SMc02654 SMc02653: SMc02653 - signal peptidase I transmembrane protein, at 1,168,934 to 1,169,677 SMc02653 SMc02652: SMc02652 - ribonuclease III, at 1,169,677 to 1,170,393 SMc02652 SMc02651: SMc02651 - GTP-binding protein Era, at 1,170,390 to 1,171,331 SMc02651 SMc02650: SMc02650 - hypothetical protein, at 1,171,344 to 1,172,069 SMc02650 Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -3 -2 -1 0 1at 1168.830 kb on + strandat 1168.830 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1168.832 kb on + strandat 1170.398 kb on + strandat 1171.329 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
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1,168,830 + +0.3
1,168,830 + +0.9
1,168,832 + -1.9
1,168,832 + +0.4
1,168,832 + +0.4
1,168,832 + +0.4
1,168,832 + -2.8
1,168,832 + +0.1
1,168,832 + -0.1
1,168,832 + +0.6
1,170,398 + -0.0
1,171,329 + +0.2

Or see this region's nucleotide sequence