Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02592 and SMc02593 overlap by 4 nucleotides SMc02593 and SMc02594 are separated by 89 nucleotides SMc02594 and SMc02595 are separated by 29 nucleotides
SMc02592: SMc02592 - hypothetical protein, at 89,910 to 90,503
SMc02592
SMc02593: SMc02593 - hypothetical protein, at 90,500 to 91,132
SMc02593
SMc02594: SMc02594 - hypothetical protein, at 91,222 to 91,890
SMc02594
SMc02595: SMc02595 - cystathionine gamma-synthase, at 91,920 to 93,146
SMc02595
Position (kb)
91
92 Strain fitness (log2 ratio)
-2
-1
0
1 at 90.286 kb on + strand, within SMc02592 at 90.287 kb on - strand, within SMc02592 at 90.287 kb on - strand, within SMc02592 at 90.424 kb on + strand, within SMc02592 at 90.424 kb on + strand, within SMc02592 at 90.424 kb on + strand, within SMc02592 at 90.425 kb on - strand, within SMc02592 at 90.486 kb on - strand at 90.546 kb on - strand at 90.738 kb on + strand, within SMc02593 at 90.739 kb on - strand, within SMc02593 at 90.739 kb on - strand, within SMc02593 at 91.071 kb on + strand at 91.147 kb on + strand at 91.147 kb on + strand at 91.298 kb on - strand, within SMc02594 at 91.367 kb on + strand, within SMc02594 at 91.367 kb on + strand, within SMc02594 at 91.367 kb on + strand, within SMc02594 at 91.367 kb on + strand, within SMc02594 at 91.368 kb on - strand, within SMc02594 at 91.370 kb on + strand, within SMc02594 at 91.371 kb on - strand, within SMc02594 at 91.371 kb on - strand, within SMc02594 at 91.432 kb on + strand, within SMc02594 at 91.471 kb on + strand, within SMc02594 at 91.583 kb on - strand, within SMc02594 at 91.675 kb on + strand, within SMc02594 at 91.676 kb on - strand, within SMc02594 at 91.723 kb on + strand, within SMc02594 at 91.723 kb on + strand, within SMc02594 at 91.724 kb on - strand, within SMc02594 at 91.724 kb on - strand, within SMc02594 at 91.872 kb on + strand at 91.899 kb on - strand at 91.956 kb on - strand at 91.967 kb on + strand at 91.967 kb on + strand at 91.968 kb on - strand at 92.120 kb on + strand, within SMc02595 at 92.120 kb on + strand, within SMc02595 at 92.120 kb on + strand, within SMc02595 at 92.120 kb on + strand, within SMc02595 at 92.242 kb on + strand, within SMc02595 at 92.278 kb on + strand, within SMc02595 at 92.278 kb on + strand, within SMc02595 at 92.278 kb on + strand, within SMc02595
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 90,286 + SMc02592 0.63 -0.6 90,287 - SMc02592 0.63 -0.3 90,287 - SMc02592 0.63 +0.4 90,424 + SMc02592 0.87 +0.2 90,424 + SMc02592 0.87 +0.4 90,424 + SMc02592 0.87 -0.2 90,425 - SMc02592 0.87 +0.0 90,486 - -1.4 90,546 - -1.1 90,738 + SMc02593 0.38 +0.3 90,739 - SMc02593 0.38 -0.3 90,739 - SMc02593 0.38 +0.1 91,071 + -0.2 91,147 + +0.0 91,147 + +0.3 91,298 - SMc02594 0.11 -0.1 91,367 + SMc02594 0.22 -1.0 91,367 + SMc02594 0.22 -0.2 91,367 + SMc02594 0.22 +0.3 91,367 + SMc02594 0.22 -0.7 91,368 - SMc02594 0.22 +0.9 91,370 + SMc02594 0.22 -0.9 91,371 - SMc02594 0.22 +0.2 91,371 - SMc02594 0.22 +0.0 91,432 + SMc02594 0.31 +0.9 91,471 + SMc02594 0.37 +1.7 91,583 - SMc02594 0.54 -0.0 91,675 + SMc02594 0.68 -0.4 91,676 - SMc02594 0.68 +0.3 91,723 + SMc02594 0.75 -1.3 91,723 + SMc02594 0.75 -0.5 91,724 - SMc02594 0.75 -0.3 91,724 - SMc02594 0.75 -0.2 91,872 + +0.7 91,899 - -0.3 91,956 - -1.9 91,967 + +0.0 91,967 + +0.1 91,968 - -0.5 92,120 + SMc02595 0.16 +1.3 92,120 + SMc02595 0.16 +0.2 92,120 + SMc02595 0.16 -0.4 92,120 + SMc02595 0.16 +0.6 92,242 + SMc02595 0.26 -0.4 92,278 + SMc02595 0.29 -0.0 92,278 + SMc02595 0.29 +0.2 92,278 + SMc02595 0.29 -0.0
Or see this region's nucleotide sequence