Strain Fitness in Sinorhizobium meliloti 1021 around SMc02594

Experiment: Fusidic 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02592 and SMc02593 overlap by 4 nucleotidesSMc02593 and SMc02594 are separated by 89 nucleotidesSMc02594 and SMc02595 are separated by 29 nucleotides SMc02592: SMc02592 - hypothetical protein, at 89,910 to 90,503 SMc02592 SMc02593: SMc02593 - hypothetical protein, at 90,500 to 91,132 SMc02593 SMc02594: SMc02594 - hypothetical protein, at 91,222 to 91,890 SMc02594 SMc02595: SMc02595 - cystathionine gamma-synthase, at 91,920 to 93,146 SMc02595 Position (kb) 91 92Strain fitness (log2 ratio) -2 -1 0 1at 90.286 kb on + strand, within SMc02592at 90.287 kb on - strand, within SMc02592at 90.287 kb on - strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.424 kb on + strand, within SMc02592at 90.425 kb on - strand, within SMc02592at 90.486 kb on - strandat 90.546 kb on - strandat 90.738 kb on + strand, within SMc02593at 90.739 kb on - strand, within SMc02593at 90.739 kb on - strand, within SMc02593at 91.071 kb on + strandat 91.147 kb on + strandat 91.147 kb on + strandat 91.298 kb on - strand, within SMc02594at 91.367 kb on + strand, within SMc02594at 91.367 kb on + strand, within SMc02594at 91.367 kb on + strand, within SMc02594at 91.367 kb on + strand, within SMc02594at 91.368 kb on - strand, within SMc02594at 91.370 kb on + strand, within SMc02594at 91.371 kb on - strand, within SMc02594at 91.371 kb on - strand, within SMc02594at 91.432 kb on + strand, within SMc02594at 91.471 kb on + strand, within SMc02594at 91.583 kb on - strand, within SMc02594at 91.675 kb on + strand, within SMc02594at 91.676 kb on - strand, within SMc02594at 91.723 kb on + strand, within SMc02594at 91.723 kb on + strand, within SMc02594at 91.724 kb on - strand, within SMc02594at 91.724 kb on - strand, within SMc02594at 91.872 kb on + strandat 91.899 kb on - strandat 91.956 kb on - strandat 91.967 kb on + strandat 91.967 kb on + strandat 91.968 kb on - strandat 92.120 kb on + strand, within SMc02595at 92.120 kb on + strand, within SMc02595at 92.120 kb on + strand, within SMc02595at 92.120 kb on + strand, within SMc02595at 92.242 kb on + strand, within SMc02595at 92.278 kb on + strand, within SMc02595at 92.278 kb on + strand, within SMc02595at 92.278 kb on + strand, within SMc02595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml
remove
90,286 + SMc02592 0.63 -0.6
90,287 - SMc02592 0.63 -0.3
90,287 - SMc02592 0.63 +0.4
90,424 + SMc02592 0.87 +0.2
90,424 + SMc02592 0.87 +0.4
90,424 + SMc02592 0.87 -0.2
90,425 - SMc02592 0.87 +0.0
90,486 - -1.4
90,546 - -1.1
90,738 + SMc02593 0.38 +0.3
90,739 - SMc02593 0.38 -0.3
90,739 - SMc02593 0.38 +0.1
91,071 + -0.2
91,147 + +0.0
91,147 + +0.3
91,298 - SMc02594 0.11 -0.1
91,367 + SMc02594 0.22 -1.0
91,367 + SMc02594 0.22 -0.2
91,367 + SMc02594 0.22 +0.3
91,367 + SMc02594 0.22 -0.7
91,368 - SMc02594 0.22 +0.9
91,370 + SMc02594 0.22 -0.9
91,371 - SMc02594 0.22 +0.2
91,371 - SMc02594 0.22 +0.0
91,432 + SMc02594 0.31 +0.9
91,471 + SMc02594 0.37 +1.7
91,583 - SMc02594 0.54 -0.0
91,675 + SMc02594 0.68 -0.4
91,676 - SMc02594 0.68 +0.3
91,723 + SMc02594 0.75 -1.3
91,723 + SMc02594 0.75 -0.5
91,724 - SMc02594 0.75 -0.3
91,724 - SMc02594 0.75 -0.2
91,872 + +0.7
91,899 - -0.3
91,956 - -1.9
91,967 + +0.0
91,967 + +0.1
91,968 - -0.5
92,120 + SMc02595 0.16 +1.3
92,120 + SMc02595 0.16 +0.2
92,120 + SMc02595 0.16 -0.4
92,120 + SMc02595 0.16 +0.6
92,242 + SMc02595 0.26 -0.4
92,278 + SMc02595 0.29 -0.0
92,278 + SMc02595 0.29 +0.2
92,278 + SMc02595 0.29 -0.0

Or see this region's nucleotide sequence