Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02251 and SMc02252 are separated by 180 nucleotides SMc02252 and SMc02253 are separated by 18 nucleotides SMc02253 and SMc02254 are separated by 234 nucleotides
SMc02251: SMc02251 - aspartate aminotransferase, at 615,760 to 616,926
SMc02251
SMc02252: SMc02252 - UDP-glucose 4-epimerase, at 617,107 to 618,135
SMc02252
SMc02253: SMc02253 - salicylate biosynthesis protein, at 618,154 to 618,459
SMc02253
SMc02254: SMc02254 - quinol oxidase subunit II transmembrane protein, at 618,694 to 619,698
SMc02254
Position (kb) 617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 616.376 kb on - strand, within SMc02251 at 616.388 kb on - strand, within SMc02251 at 616.552 kb on + strand, within SMc02251 at 616.553 kb on - strand, within SMc02251 at 616.662 kb on + strand, within SMc02251 at 616.663 kb on - strand, within SMc02251 at 616.909 kb on + strand at 616.910 kb on - strand at 617.084 kb on + strand at 617.137 kb on + strand at 617.137 kb on + strand at 617.138 kb on - strand at 617.140 kb on - strand at 617.140 kb on - strand at 617.140 kb on - strand at 617.140 kb on - strand at 617.140 kb on - strand at 617.248 kb on + strand, within SMc02252 at 617.372 kb on - strand, within SMc02252 at 617.374 kb on + strand, within SMc02252 at 617.468 kb on - strand at 617.743 kb on + strand, within SMc02252 at 617.776 kb on + strand, within SMc02252 at 617.776 kb on + strand, within SMc02252 at 617.776 kb on + strand, within SMc02252 at 617.777 kb on - strand, within SMc02252 at 617.777 kb on - strand, within SMc02252 at 617.778 kb on + strand, within SMc02252 at 617.779 kb on - strand, within SMc02252 at 617.824 kb on + strand, within SMc02252 at 617.824 kb on + strand, within SMc02252 at 617.824 kb on + strand, within SMc02252 at 617.824 kb on + strand, within SMc02252 at 617.828 kb on + strand, within SMc02252 at 617.829 kb on - strand, within SMc02252 at 617.941 kb on + strand, within SMc02252 at 617.975 kb on + strand, within SMc02252 at 617.975 kb on + strand, within SMc02252 at 618.043 kb on - strand at 618.230 kb on + strand, within SMc02253 at 618.230 kb on + strand, within SMc02253 at 618.354 kb on + strand, within SMc02253 at 618.356 kb on + strand, within SMc02253 at 618.357 kb on - strand, within SMc02253 at 618.418 kb on + strand, within SMc02253 at 618.418 kb on + strand, within SMc02253 at 618.419 kb on - strand, within SMc02253 at 618.419 kb on - strand, within SMc02253 at 618.511 kb on - strand at 618.701 kb on + strand at 618.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 616,376 - SMc02251 0.53 +0.1 616,388 - SMc02251 0.54 -0.1 616,552 + SMc02251 0.68 -0.0 616,553 - SMc02251 0.68 -3.5 616,662 + SMc02251 0.77 +0.1 616,663 - SMc02251 0.77 -0.8 616,909 + -1.1 616,910 - -0.4 617,084 + +0.1 617,137 + +0.0 617,137 + -0.6 617,138 - -2.5 617,140 - +0.1 617,140 - -0.2 617,140 - +0.6 617,140 - +0.0 617,140 - -0.8 617,248 + SMc02252 0.14 +0.3 617,372 - SMc02252 0.26 +1.2 617,374 + SMc02252 0.26 -0.5 617,468 - +1.9 617,743 + SMc02252 0.62 -1.1 617,776 + SMc02252 0.65 -0.2 617,776 + SMc02252 0.65 +0.2 617,776 + SMc02252 0.65 -0.8 617,777 - SMc02252 0.65 +0.0 617,777 - SMc02252 0.65 +0.2 617,778 + SMc02252 0.65 -0.0 617,779 - SMc02252 0.65 +0.2 617,824 + SMc02252 0.70 -0.7 617,824 + SMc02252 0.70 -0.9 617,824 + SMc02252 0.70 +0.0 617,824 + SMc02252 0.70 +0.5 617,828 + SMc02252 0.70 -0.2 617,829 - SMc02252 0.70 +0.2 617,941 + SMc02252 0.81 -0.0 617,975 + SMc02252 0.84 -0.1 617,975 + SMc02252 0.84 +0.5 618,043 - -0.1 618,230 + SMc02253 0.25 +0.4 618,230 + SMc02253 0.25 +0.3 618,354 + SMc02253 0.65 -0.8 618,356 + SMc02253 0.66 +0.1 618,357 - SMc02253 0.66 +0.8 618,418 + SMc02253 0.86 -2.0 618,418 + SMc02253 0.86 -0.9 618,419 - SMc02253 0.87 -0.5 618,419 - SMc02253 0.87 -1.5 618,511 - +0.3 618,701 + +0.5 618,747 - -0.8
Or see this region's nucleotide sequence