Experiment: Fusidic 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02084 and SMc02083 are separated by 975 nucleotides SMc02083 and SMc02082 are separated by 276 nucleotides
SMc02084: SMc02084 - biopolymer transport transmembrane protein, at 1,627,335 to 1,627,760
SMc02084
SMc02083: SMc02083 - methyltransferase (PCM-like) transmembrane protein, at 1,628,736 to 1,629,395
SMc02083
SMc02082: SMc02082 - outer membrane secretion protein, at 1,629,672 to 1,631,042
SMc02082
Position (kb)
1628
1629
1630 Strain fitness (log2 ratio)
-2
-1
0
1 at 1627.903 kb on + strand at 1627.913 kb on + strand at 1627.913 kb on + strand at 1627.914 kb on - strand at 1627.936 kb on - strand at 1627.936 kb on - strand at 1627.936 kb on - strand at 1627.936 kb on - strand at 1627.936 kb on - strand at 1627.936 kb on - strand at 1628.045 kb on - strand at 1628.045 kb on - strand at 1628.180 kb on - strand at 1628.180 kb on - strand at 1628.316 kb on + strand at 1628.316 kb on + strand at 1628.316 kb on + strand at 1628.316 kb on + strand at 1628.316 kb on + strand at 1628.316 kb on + strand at 1628.316 kb on + strand at 1628.322 kb on + strand at 1628.322 kb on + strand at 1628.371 kb on + strand at 1628.372 kb on - strand at 1628.372 kb on - strand at 1628.390 kb on + strand at 1628.545 kb on + strand at 1629.414 kb on - strand at 1629.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0001 mg/ml remove 1,627,903 + -1.1 1,627,913 + +0.0 1,627,913 + +0.1 1,627,914 - -0.2 1,627,936 - -0.3 1,627,936 - +0.3 1,627,936 - +0.1 1,627,936 - +0.3 1,627,936 - -0.0 1,627,936 - -0.8 1,628,045 - +0.2 1,628,045 - -0.3 1,628,180 - -0.6 1,628,180 - -1.9 1,628,316 + -0.1 1,628,316 + +0.2 1,628,316 + -0.2 1,628,316 + -2.0 1,628,316 + +0.5 1,628,316 + -0.4 1,628,316 + -0.1 1,628,322 + -0.1 1,628,322 + -0.4 1,628,371 + +0.4 1,628,372 - -0.0 1,628,372 - -0.2 1,628,390 + +0.2 1,628,545 + +0.6 1,629,414 - -0.2 1,629,438 + -0.1
Or see this region's nucleotide sequence